BAC Information

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BAC

Clone NameMSMg01-094J23
Chromosome5 (Build37)
Map Location 103,791,229 - 103,876,568
singlet/doubletdoublet
Overlap geneLOC100041049, Ptpn13
Upstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094J23.T7 (MSMg01no094_j23.b1)MSMg01-094J23.TJ (MSMg01no094_j23.g1)
ACCAG311740AG311741
length700716
length of high quality
(start - end)
183 (131 - 313)637 (73 - 709)
definitionCHROMAT_FILE: MSMg01no094_j23.b1 PHD_FILE: MSMg01no094_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:21 2005CHROMAT_FILE: MSMg01no094_j23.g1 PHD_FILE: MSMg01no094_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,791,229 - 103,791,411)(103,875,932 - 103,876,568)
sequence
AATCTAGAGGCGCTTCTCAGAGAACTATTCCGATCTGAAAGCNGGATTCT
TGGCTCCTCTTTCACCAAAAAGACGTGCAGGCTGACATGCTTCCCACCAC
GATGACAATGTTCTACCCTTCTTAAAGTATAAGCCAGGCCCAAATTAAAC
GTTTTCTTCCATAAGGGTTGCCGTGATCATGGAGTGTCTTCACAGCAATA
AAAATCCTAAGACACTAGGCTTGTGGCAACAGCTCAGCTGGTAGTGTAGG
GCTTGCCACATATGCTTGAAGGATTGAGTTCAATGCTTTGCACCCACACA
AAAAGCCAAGTATGTTGTCAGGCATGTATAAATAACCCCAGAACTGAAAA
ATATTTTTTTTTCCACCCCCCGCGATTCACTGGCTATATAGCCAAGTCAA
ACCTGCCAGCCCCAAATAAAAAAAAAAAAACTTGTGGGGGGAGGGGAAGT
GAATGTTTCTGACAAATCACGCCCAGAGTTGACCATCTGGACTTTATGTT
ATCCTACCACACACTACTTGTATTCTTGAACCCCTTTTCCCTATCCATTA
ATAACCCGAATCCACGCTTATCCTTCATCCACTCCTTAGACTCCACTATC
ACCCTCTCACTTGGTAGAACACACACCTCCAAATATTACCCCTCACCAAT
AAGTATTCCCGACACAACTACACCATTCCTAAATTTCCCGCTTTTTACTT

CAATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCAGTTAAAACAGAAAAGCAGCCTTG
AGACTGGCATGCTGGTGTGTAACCCCAGGCTGGCTTAAACTCCTGGGCTT
CTTGCCTCAGCCTCTGAGTATTATGGTCATGAGCATGTGGCACCATGCCT
GGCTGAGATGTGTCTTTTAGTGGTAAAGCTTCTTCCATTTGGAAACAGCA
GTGTGTCCCATGTACTCCTGATGGGCCGCAGAACGGAGCTGCGCAGGTGT
GGTCAGTTCGGTACAGTTTCTTACACCACAGAGAAACTAGAGCTGTTGTC
CTAGAGAAGTAGAGAAGGCAGAAAGCCATGGGCAGGAACCCTCAGAGGTT
CTCCTGCCTTCCTGGGAGCCTGGCTTGCGGGATCCCTAACAGGTATTTCT
AGACCTAGCTGTTTATCTTGAGCACAAGTCTGCCCCTGATCCCAGGGCTG
ATGGGGAGCACAAAATTCCTATGTGCTATTAATAAAGAACATTTCATCTT
TCTTAAACCTAAGTCTACCCCTTTATCAAAGCCTGACATTGCAAGTGCTT
GCAAACATTATGATGCCTTCCTAGACCTGGTAGCCTCCCTTCAGCACTAA
GGTTTTTAGATAAGCAAATTCTACACTCCTTACAGAACGGTTCTAACCCT
GCATGATGTCACTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_j23.b1 MSMg01no094_j23.b1 CHROMAT_FILE:
MSMg01no094_j23.b1 PHD_FILE: MSMg01no094_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:21 2005
         (183 letters)



>mm_chr5_103791029_103791611
          Length = 583

 Score =  339 bits (175), Expect = 9e-98
 Identities = 181/183 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccaggcccaaattaaacgttttcttccataagggttgccgtgatcatggagtgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccaggcccaaattaaacgttttcttccataagggttgccgtgatcatggagtgtctt 260

                                                                       
Query: 61  cacagcaataaaaatcctaagacactaggcttgtggcaacagctcagctggtagtgtagg 120
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 cacagcaataaaaaacctaagacactaggcttgtggcaacagctcagctggtggtgtagg 320

                                                                       
Query: 121 gcttgccacatatgcttgaaggattgagttcaatgctttgcacccacacaaaaagccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgccacatatgcttgaaggattgagttcaatgctttgcacccacacaaaaagccaag 380

              
Query: 181 tat 183
           |||
Sbjct: 381 tat 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no094_j23.g1 MSMg01no094_j23.g1 CHROMAT_FILE:
MSMg01no094_j23.g1 PHD_FILE: MSMg01no094_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:21 2005
         (637 letters)



>mm_chr5_103875600_103876636
          Length = 1037

 Score = 1178 bits (609), Expect = 0.0
 Identities = 630/637 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagttaaaacagaaaagcagccttgagactggcatgctggtgtgtaaccccaggctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 969 attcagttaaaacagaaaagcagccttgagactggcatgctggtgtgtaagcccaggctg 910

                                                                       
Query: 61  gcttaaactcctgggcttcttgcctcagcctctgagtattatggtcatgagcatgtggca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 909 gcttaaactcctgggcttcttgcctcagcctctgagtattatggtcatgagcatgtggta 850

                                                                       
Query: 121 ccatgcctggctgagatgtgtcttttagtggtaaagcttcttccatttggaaacagcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ccatgcctggctgagatgtgtcttttagtggtaaagcttcttccatttggaaacagcagt 790

                                                                       
Query: 181 gtgtcccatgtactcctgatgggccgcagaacggagctgcgcaggtgtggtcagttcggt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtgtcccatgtactcctgacgggccgcagaacggagctgcgcaggtgtggtcagttcggt 730

                                                                       
Query: 241 acagtttcttacaccacagagaaactagagctgttgtcctagagaagtagagaaggcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acagtttcttacaccacagagaaactagagctgttgtcctagagaagtagagaaggcaga 670

                                                                       
Query: 301 aagccatgggcaggaaccctcagaggttctcctgccttcctgggagcctggcttgcggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aagccatgggcaggaaccctcagaggttctcctgccttcctgggagcctggcttgcggga 610

                                                                       
Query: 361 tccctaacaggtatttctagacctagctgtttatcttgagcacaagtctgcccctgatcc 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 609 tccctaacaggtatttcaagacctagctgtttatcttgagcacaagtctacccctgatcc 550

                                                                       
Query: 421 cagggctgatggggagcacaaaattcctatgtgctattaataaagaacatttcatctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagggctgatggggagcacaaaattcctatgtgctattaataaagaacatttcatctttc 490

                                                                       
Query: 481 ttaaacctaagtctacccctttatcaaagcctgacattgcaagtgcttgcaaacattatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 489 ttaaacctaagtctacccctttatcaaagcctgacattgcaagtgcttgcaaacattatt 430

                                                                       
Query: 541 atgccttcctagacctggtagcctcccttcagcactaaggtttttagataagcaaattct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgccttcctagacctggtagcctcccttcagcactaaggtttttagataagcaaattct 370

                                                
Query: 601 acactccttacagaacggttctaaccctgcatgatgt 637
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 369 acactccttacagaacggttctaaccctgcacgatgt 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)