GCGGCCGCTATACGACTCCTATAGCGAGXXXXXXXXXXXXXXXXXXXGAA
TGAAAGTTGAACTTGACCTTTGACACCAGCATACAATTGCATACATGTTC
ACAAGCACCAACATATATGTGTACATATACACATACGTACATGAAAAACT
CCAAATATAAACACAGACATATGAAGAGAAACAAAACTGGAGACATGAAT
ACAGATTATAAAATCGTACATAGTTTGCAAAAATGACTGTGTGCCCTAAT
GTCCCTGGGAAACACTTGCTGCTGCAACAGTGTGGCAATAGAGAGCAGTG
AGTTTTAATGGGAAGGGCTTTTTGGGAACTTTTTTCATGGTTTTATGGGC
TGTAATAATTGTAAATACGGAGCTGTAGTAGCTACAGAGCCATCAGGTGC
AAGAAGAAAGCTGACGCGAAATTTAGCATGTGTGGGAGAAACAGAAGGGA
AGATTACAGTTAAGTCTATAAGTCCAGACCATGCGGTGTGGACCAGAGCT
TCCTGCCCCATTTCAGAAATTTTTCTGTTTATGAATAATTTTAGTAATGA
ACATCACACTAAGGGAAGCAATTAGTGAAACACAATTCTAAATTTCTATA
GGTGCATACACCCAAGACATAAACACATTTTATTTTATTTTTTTTTAGTT
CTAAATTTAACGCATTTTTTATA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATAACTGTGTATTGTGCTTATTCACTCAGAATTAAGAAGCTAAGA
TTGCAAGTGAGTCTGTTGATTTGTCTGCCACCTTTTAATTGAGGTCCAGG
CTACCTCTTCAGAGGGAATATAACATTCACCACAGTTACAAATAACTTGT
AATATCATCTAGTCGAAATACAGAAATCTAGCTTTATTATAGATAAAATA
CTGAGATGGGAGTCATGCTTATCTGTGAGCTCTTGAAAAGATATTGTCAC
ATGCATCAGCCAAGGTTTGGCTCACCTGCATCCCATGCTAGATTCTAAGC
AAGGTCCCACACAGTTGCAGTGTTCATTAATACTAAAGGATGCTATCAGT
TCTCCCAAAAACAACAGCATGTGATTGAAAGACCATGGTATTTAAAAGTG
TACATATGTACATACATACATACATATGTAGCAGAGTATGGCCATATCTG
TCATTAAAGGAGGGGAGGGAGGCTTGATGCCCCACATAGGGGGATGCTAA
AGGGGTGAGGCGGGAGTGGGTAAATGGGTGGGGAGCTCTTCGTCTCTACA
TCTCTCTTTTCTTCCCCCTTTTTTTCTCCATCCCCTTCTCCCACCTTTCT
TCTCCTTTTCCTA

Query= MSMg01no095_a07.b1 MSMg01no095_a07.b1 CHROMAT_FILE:
MSMg01no095_a07.b1 PHD_FILE: MSMg01no095_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:54 2005
         (567 letters)



>mm_chr5_41094405_41095371
          Length = 967

 Score =  957 bits (495), Expect = 0.0
 Identities = 549/567 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatgaaagttgaacttgacctttgacaccagcatacaattgcatacatgttcacaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatgaaagttgaacttgacctttgacaccagcatacaattgcatacatgttcacaagca 260

                                                                       
Query: 61  ccaacatatatgtgtacatatacacatacgtacatgaaaaactccaaatataaacacaga 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ccaacatatatgtgtacatatacacatatgtacatgaaaaactccaaatataaacacaga 320

                                                                       
Query: 121 catatgaagagaaacaaaactggagacatgaatacagattataaaatcgtacatagtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatgaagagaaacaaaactggagacatgaatacagattataaaatcgtacatagtttg 380

                                                                       
Query: 181 caaaaatgactgtgtgccctaatgtccctgggaaacacttgctgctgcaacagtgtggca 240
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 381 caaaaatgactgtgtgccctaatgtccctgggaagcacttgctgctgcaacagtgtagca 440

                                                                       
Query: 241 atagagagcagtgagttttaatgggaagggctttttgggaacttttttcatggttttatg 300
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 atagagagcagtgagtttaaatgggaagggctttttggggacttttttcatggttttatg 500

                                                                       
Query: 301 ggctgtaataattgtaaatacggagctgtagtagctacagagccatcaggtgcaagaaga 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||
Sbjct: 501 ggctgtaataattgtaaatacggagctgtagtagctacatagccatcaaatgcaggaaga 560

                                                                       
Query: 361 aagctgacgcgaaatttagcatgtgtgggagaaacagaagggaagattacagttaagtct 420
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagctgacgaaaaatttagcatgtgtgggagaaacagaagggaagattacagttaagtct 620

                                                                       
Query: 421 ataagtccagaccatgcggtgtggaccagagcttcctgccccatttcagaaatttttctg 480
           |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 621 ataagtccagaccaagcagtgtggaccagagcttcctgccccattttggaaatttttctg 680

                                                                       
Query: 481 tttatgaataattttagtaatgaacatcacactaagggaagcaattagtgaaacacaatt 540
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tttatgtataattttagtaatgaacatcacacgaagggaagcaattagtgaaacacaatt 740

                                      
Query: 541 ctaaatttctataggtgcatacaccca 567
           |||||||||||||| ||||||||||||
Sbjct: 741 ctaaatttctatagatgcatacaccca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no095_a07.g1 MSMg01no095_a07.g1 CHROMAT_FILE:
MSMg01no095_a07.g1 PHD_FILE: MSMg01no095_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:54 2005
         (528 letters)



>mm_chr5_41267113_41268040
          Length = 928

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaagtgagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaagtgagtct 537

                                                                       
Query: 61  gttgatttgtctgccaccttttaattgaggtccaggctacctcttcagagggaatataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gttgatttgtctgccaccttttaattgaggtccaggctacctcttcagagggaatataac 477

                                                                       
Query: 121 attcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaatctagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 attcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaatctagctt 417

                                                                       
Query: 181 tattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaaaagatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaaaagatat 357

                                                                       
Query: 241 tgtcacatgcatcagccaaggtttggctcacctgcatcccatgctagattctaagcaagg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgtcacatggatcagccaaggtttggctcacctgcatcccatgctagattctaagcaagg 297

                                                                       
Query: 301 tcccacacagttgcagtgttcattaatactaaaggatgctatcagttctcccaaaaacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 296 tcccacacagttgcagtgttcattaatactaaaggatgctatcagttctccccaaaacaa 237

                                                                       
Query: 361 cagcatgtgattgaaagaccatggtatttaaaagtgtacatatgtacatacatacataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cagcatgtgattgaaagaccatggtatttaaaagtgtacatatgtacatacatacataca 177

                                                                       
Query: 421 tatgtagcagagtatggccatatctgtcattaaaggaggggagggaggcttgatgcccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tatgtagcagagtatggccatatctgtcattaaaggaggggagggaggcttgatgcccca 117

                                                           
Query: 481 catagggggatgctaaaggggtgaggcgggagtgggtaaatgggtggg 528
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 116 catagggggattctaaaggggtgaggcgggagtgggtaaatgggtggg 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)