BAC Information

Click to search

BAC

Clone NameMSMg01-095G17
Chromosome5 (Build37)
Map Location 13,578,415 - 13,578,709
singlet/doubletsinglet
Overlap geneSema3a
Upstream geneSema3d, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095G17.T7 (MSMg01no095_g17.b1)MSMg01-095G17.TJ (MSMg01no095_g17.g1)
ACCAG312336AG312337
length708718
length of high quality
(start - end)
299 (60 - 358)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no095_g17.b1 PHD_FILE: MSMg01no095_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:26 2005CHROMAT_FILE: MSMg01no095_g17.g1 PHD_FILE: MSMg01no095_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGGCAGAGGATCCGCGGAATTCAGAGTT
TTATACGAGCTAATGATTAGTCTTTTCATTTATAACAAATGGATGTTTTA
CCAAGACAAGAAAGAAAAACAACTTATTTCTCAATACTGTGCTACAGATA
TGACACAACTTGACTTCTAAAAATTATGTTTTCTACATCACTACCTACTC
TTCAATCCATTAAATGAATGATAATTTTGGAAATAAATGAATATACTGAA
CAGAGGTCTATTAGCAAGTAGCAGAGCATAAGGATGAAAACGAAATTGGC
TGCCCCTTTACTGCTGTAAAAACTTATCTATAGAACTGTGAATGTAAGCC
TCTGTTGGAATATAACAGCTATTTCTGATCTGTTTGCCTGTTTTGCCTTT
GACATTGTTCCACCTCTTGAACAAAATGATAAATTATGGTGCCAACAAAA
TGCAGCGTGTACCCTTTCCACACAGACATATCAAAATAGATTGATAATCT
CCCAGATATTTAAACTCAGAGAGCTGACATTATTGACCTGATACTGCTAT
CGTACACGTCATTAACATGTATTCACCTGTTCTTCACATCTAAAAATTGT
CACATCTTGGCAAGGAAATCCGGGGCTTTCCAGGATGCAAGCTAGACAGG
GATAATCTTTCCTGTAATGATTTTTCAAGGTATTTATTTATATTTATCCT
CTGCTAGA
AATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAGAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCAGTTCCTCAGAAAATTGGACATAGTATTACCGAAGGATCCAGC
AATACCTCTCCTGGTTATATATCCACACACATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTTCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACTATTTCCTA
AACACATGAAACTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_g17.b1 MSMg01no095_g17.b1 CHROMAT_FILE:
MSMg01no095_g17.b1 PHD_FILE: MSMg01no095_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:26 2005
         (299 letters)



>mm_chr5_13578212_13578909
          Length = 698

 Score =  534 bits (276), Expect = e-156
 Identities = 291/296 (98%), Gaps = 1/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgattagtcttttcatttataacaaatggatgttttaccaagacaagaaagaaaaacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atgattagtcttttcatttataacaaatggatgttttaccaagacaagaaagaaaaacaa 263

                                                                       
Query: 64  cttatttctcaatactgtgctacagatatgacacaacttgacttctaaaaattatgtttt 123
           |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 264 cttatttctcaatactgtgctaaagatatgacacaatttgacttctaaaaattatgtttt 323

                                                                       
Query: 124 ctacatcactacctactcttcaatccattaaatgaatgataattttggaaataaatgaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctacatcactacctactcttcaatccattaaatgaatgataattttggaaataaatgaat 383

                                                                       
Query: 184 atactgaacagaggtctattagcaagtagcagagcataaggatgaaaacgaaattggctg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 atactgaacagaggtctattagcaagtagcagagcataaggatgaaaacgaagttggctg 443

                                                                   
Query: 244 cccctttactgctgtaaaaacttatctatagaactgtgaatgtaagcctctgttgg 299
           |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 cccctt-actgctgtaaaaacttatctatagaactgtgaatgtaagcctcagttgg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space:   199810
Effective search space used:   199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)