Query= MSMg01no095_i02.b1 MSMg01no095_i02.b1 CHROMAT_FILE:
MSMg01no095_i02.b1 PHD_FILE: MSMg01no095_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:33 2005
(655 letters)
>mm_chr5_138679807_138680861
Length = 1055
Score = 901 bits (466), Expect = 0.0
Identities = 606/658 (92%), Gaps = 14/658 (2%)
Strand = Plus / Plus
Query: 5 gaattccactgggccccccaatttccctgttaaaatggggtgactccagtgtcaatttcc 64
|||| |||||||||| ||| | ||||||||||| ||||||||||||||| | ||||||
Sbjct: 205 gaataccactgggccaccctacttccctgttaacatggggtgactccaggggcaattttt 264
Query: 65 agaaattctagtaacacaatcacgccagccttgagatctttctttcacataaaggtcatg 124
||||||||| |||||| |||||| |||| |||||||| ||||||||||||||||||||||
Sbjct: 265 agaaattctggtaacagaatcacaccagtcttgagatgtttctttcacataaaggtcatg 324
Query: 125 gtgactcaaatgcaaggcttataaaggacagacagaaagacacaggcagataggacactt 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 gtgactcaaatgcaaggcttataaaggacagacagaaagacacgggcagataggacactt 384
Query: 185 aggtgctactcaggcaatagaaaca-cttcctttgccaggtggtggtggc--c----cac 237
|||||||| |||| |||||| |||| | |||||||| |||||||||||| | |||
Sbjct: 385 aggtgctattcagccaataggaacagc-tcctttgctgggtggtggtggcagcggtgcac 443
Query: 238 tcctttaatcccaacacttgggaggcagaggcaggcagatttccgagttcgaggccagcc 297
|||||| |||||| |||||||||||||||| |||||||||||| |||||| |||||||||
Sbjct: 444 tccttttatcccagcacttgggaggcagagacaggcagatttctgagttcaaggccagcc 503
Query: 298 tagtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcgaaaa 357
| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 504 tggtctacaaagtgagttccaggacagtcagggctacacagagaaaccctgtctcgaaaa 563
Query: 358 aaacaaaacaaagcaaaacaaaaaaagtaaggaacacctccttcgaggaagaaaatggaa 417
|| |||| |||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 564 gaataaaa-----caaaac-aaaaaagtaagaaacacctcctttgaggaagaaaatggaa 617
Query: 418 cacacacagaatgatggcacaatcctttctctttaccacaggtgctctgcttcatgatgc 477
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cacacacagcatgatggcacaatcctttctctttaccacaggtgctctgcttcatgatgc 677
Query: 478 ggtggcctgagcccatgatccattggctcccacaacccagtactgttcctgagtatgtct 537
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 678 cttggcctgagcccatgatccattggctcccacaacccagcactgtccctgagtatgtct 737
Query: 538 cagaatccatcgactgggactctctgcctcaagaactccccaacctgaccagccttcttt 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 738 cagaatccatcgactgggactctctgcctcaagaactccccaacctgaccagccttctct 797
Query: 598 attggcctccaactggtgaagacagggatgattttttggcctctaccagccccagaac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 attggcctccaactggtgaagacagggatgattttttggcctctaccagccccagaac 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_i02.g1 MSMg01no095_i02.g1 CHROMAT_FILE:
MSMg01no095_i02.g1 PHD_FILE: MSMg01no095_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:33 2005
(609 letters)
>mm_chr5_138612412_138613420
Length = 1009
Score = 1139 bits (589), Expect = 0.0
Identities = 604/609 (99%)
Strand = Plus / Plus
Query: 1 ctagcgccccgagcagcagaggctggcccagtaacctagtcccttgcgtcacgtattgaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctagcgccccgagcagcagaggctggcccagtaacctagtcccttgggtcacgtattgaa 260
Query: 61 tgtattgaaccacgtcacccggtctctaccgagcgcgcccctcctttgtggactccattg 120
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgcattgaaccaagtcacccggtctctaccgagcgcgcccctcctttgtggactccactg 320
Query: 121 ggttctctccataacacaaacacatcaccttttccaaggaggattgcttcctccatcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttctctccataacacaaacacatcaccttttccaaggaggattgcttcctccatcctt 380
Query: 181 gacgcccactgcttattgcaggcgcagttcgcctgtcctcggagtcacagatcccggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacgcccactgcttattgcaggcgcagttcgcctgtcctcggagtcacagatcccggctc 440
Query: 241 actccccctcccccgcccgaccccaagactccagcacccctcaacaggtgcaggtagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccccctcccccgcccgaccccaagactccagcacccctcaacaggtgcaggtagaag 500
Query: 301 tttccctccgaggacgccgcccccagccctatagatcttcacctttttcgatcgcgtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttccctccgaggacgccgcccccagccctatagatcttcacctttttcgatcgcgtagt 560
Query: 361 ccttaagcgccatcgctgccggggacggtgtggcaggacttgaagggctcaaaaatctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttaagcgccatcgctgccggggacggtgtggcaggacttgaagggctcaaaaatctct 620
Query: 421 ctctggggaagcagaaaacgaacgcgcggcgggacgtagacggccaaccgaaattggcgc 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 ctctggggaagcagaaaacgaacgcgcggcgggacgtagccggccaaccgaaattggcgc 680
Query: 481 gaaacgtcgtcacccatgtgacccgtgcggctgagaacccgccaatcagatagggggttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaacgtcgtcacccatgtgacccgtgcggctgagaacccgccaatcagatagggggttc 740
Query: 541 ccaactgctgccagcccctaactttaaccaatcaatggacgagtctagattgaatgacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaactgctgccagcccctaactttaaccaatcaatggacgagtctagattgaatgacaa 800
Query: 601 ggggcttga 609
|||||||||
Sbjct: 801 ggggcttga 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
