BAC Information

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BAC

Clone NameMSMg01-095I17
Chromosome5 (Build37)
Map Location 12,647,997 - 12,648,265
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917
Downstream geneLOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I17.T7 (MSMg01no095_i17.b1)MSMg01-095I17.TJ (MSMg01no095_i17.g1)
ACCAG312432AG312433
length720750
length of high quality
(start - end)
643 (45 - 687)273 (74 - 346)
definitionCHROMAT_FILE: MSMg01no095_i17.b1 PHD_FILE: MSMg01no095_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:36 2005CHROMAT_FILE: MSMg01no095_i17.g1 PHD_FILE: MSMg01no095_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTCTTAGTCATCAGGGAAATGCAAATCAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGTTAAGATCAAAACCTCAGGTGACAGTA
AATGCTGTTGGCGAGGATATGGAAAAATAGGAACACTCCCCCATTTCTGG
TGGGATTGCAAGTTGGTACAGCCACTCTCAAAATCAGTTCGGAAGTTCCT
CAGAAAACTGGACATAGTACTACCTGAGGACCCAGCAATACTTCTCTTGG
ACATATACCCAGAAGATGTTCCAACATGTAATAAGGACTCATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATATCCCTGGACAGAGGAATGGATACAGAAAATGTGGTACATTTAAACAA
TGGAGTACTATGCAGCTATTAAAAACAATGAATTTATGAAATTCTTAAGA
CAAATGGATGGGTCTGGAGGCTATCATCCTAAGTGAGGCAACCCAATCAC
AAAAGAACACACATGATATGCATTCACTGATAAGTGGATATTAGCCCAGT
AGCTCGGAATACCCAAGATACAATTTGCAAAACACATGAAGCTCATGAAG
AAGGAAGACCAAAGTGTGAATACTTCGATCCTTCCTAGAAAGGGGAACAA
AATACTCATGGAAGGAGATA
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCCCTCCACATGCAATATTCACAAAT
AGGAACACATAATATACTCCATACACCATTAAAAATTTTTAATGAACTAT
ATTATTCTTTATTATACTGATTTCTTTCTAAGACATTACACTTTTAGAAT
GAAGATTTAAGTGAATTTAACCAATTCTCTCTGCTCCTATATTTTATTTT
TATTATTATATTTTGGAACCTGTGTTCTAAATTTTACTGTGACACCTTTT
GGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGGTTTTTTTCTCGAAGA
AAAAAACCTATTTTTTTTTTTCCCCCCCCCCCCCCCTTATTTTAGATTTT
TTTTTCTATTTTCTACTCCCCCCCTATATAATAAATAAAAATACTTGGGG
GGTGGGGGTGTTTTTTTGTTGTTGTTTTTTCTCAGTTTTGATTTATATTA
CTATCGACTCATAATTTTTTCCCCATTTTTTCTATTTGTTACCTCTTTTT
ATTTCTTTTTTTAATACCAAATTATTCCCCTGTCATGTTCTATATTACCC
ATTCGATCGTTCTCCCTTTCTATATCTTCTCCAGACTAACCTTGTGGCTT
TTTATGCGCGCGTTCTACTACTATACGTATCGTATTGTACCTATATGCTA
ACAGCCTATTAACCTCTGTACGTGCGATACTATTACTGTGGTGTTCGTGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i17.g1 MSMg01no095_i17.g1 CHROMAT_FILE:
MSMg01no095_i17.g1 PHD_FILE: MSMg01no095_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:36 2005
         (273 letters)



>mm_chr5_12647797_12648469
          Length = 673

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccctccacatgcaatattcacaaataggaacacataatatactccatacaccattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 tgccctccacatgcaatattcacaaataggaacacataatatactccatacaaaattaaa 260

                                                                       
Query: 61  aatttttaatgaactatattattctttattatactgatttctttctaagacattacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttttaatgaactatattattctttattatactgatttctttctaagacattacactt 320

                                                                       
Query: 121 ttagaatgaagatttaagtgaatttaaccaattctctctgctcctatattttatttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaatgaagatttaagtgaatttaaccaattctctctgctcctatattttatttttat 380

                                                                       
Query: 181 tattatattttggaacctgtgttctaaattttactgtgacaccttttgggtttttttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattatattttggaacctgtgttctaaattttactgtgacaccttttgggtttttttgtt 440

                                        
Query: 241 ttgttttgttttgtttttttggttttttt 269
           |||||||||||||||||||||||||||||
Sbjct: 441 ttgttttgttttgtttttttggttttttt 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)