BAC Information

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BAC

Clone NameMSMg01-095J15
Chromosome5 (Build37)
Map Location 98,027,729 - 98,027,967
singlet/doubletsinglet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095J15.T7 (MSMg01no095_j15.b1)MSMg01-095J15.TJ (MSMg01no095_j15.g1)
ACCAG312476AG312477
length675684
length of high quality
(start - end)
235 (96 - 330)288 (55 - 342)
definitionCHROMAT_FILE: MSMg01no095_j15.b1 PHD_FILE: MSMg01no095_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:40 2005CHROMAT_FILE: MSMg01no095_j15.g1 PHD_FILE: MSMg01no095_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTCCAAGAGATCCGCGGAATTCAGGATTTACCCAAGTGTACATG
AGAACCGAGGAATGTCACCACCAGACGGAGGAAACTTGCTAACACCTATC
GGCATTTTTAGGTAGAGAATGTTCAAGCATATTGCCGGTGGGTGCTGCCT
GTGCCTTCATTTCTCTGAGATTTAAACTAAACAGATATTAAAGGCATTTG
AAAACAATAAAAATGACAGCTTTATTCACGTAGATGTGAGCATACGAATG
TGCGTGTGTGTGAGTGTGCGTGTGTGGGGGGGGGCACACAGGGTCATGCA
CAATGTGTGACTGTTGCTCATTAGATGGTGCTTTCCACCTCACGTCTTGC
AGAGGCGAGGGAGCCCTCTACTGATTAGAAACTGTACCAGTTGCGAACTT
ATCAAGGTTACTTTTAGTTCACTGCTTGCATCTCTTCCTAAGGCAGGGCA
TTTTGCTCATGTCTTTTTCAAATCCTAAGAGAAGTATTTTTGTTTTTATT
GTTCGTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTTTATCTCTTTCTTACTCCCCTTCTTTTGATGTTCT
TTTATTAGCCACTTTCGGCGTTGTTTAACATTTTTTTGTATCCCCCCGCA
ATTTACGACTAATTATTACTGTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACCAGAGCAGAAGGAGAAAGAAAAAAAAGTCAGATATAATAGAATA
ATTATGCACACCAAGCCCAACTGAAAAGCAGTCACGGGCAAATGAAATCT
ATACAGCTGTTGTCCAGGGCTAAGGTTAGGAGAAATGGGAACAACTGTTT
TTTAACAAAGAGCTGCCATGGGCTACTGAGATGTCTCCATCCCGGCCTAC
TGCGGGCAGTCCTTGTTATTGTATGGTGTCCCCAGAAAAATACTAATATA
AAAAATGTAATAAAAATCTATACTAATAAAAATTTATAGCCTCATTATTA
AATATCCCTGACCGAGGGAAAGAAAAATTTTGAATTGTAAATTAGAAAAA
GAAATGAAAGTTCTAAAATTATTAGGAACAAAAGCTGAAATTATATAAAT
TGAAACTAAGAAAAGAAGAAATAAATATTGAAATGTAGCTATGAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
TTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATTCATCCTGAGTGAGGAAACCATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_j15.b1 MSMg01no095_j15.b1 CHROMAT_FILE:
MSMg01no095_j15.b1 PHD_FILE: MSMg01no095_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:40 2005
         (235 letters)



>mm_chr5_98027529_98028167
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/239 (97%), Gaps = 4/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcggcatttttaggtagagaatgttcaagcatattgccggtgggtgctgcctgtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatcggcatttttaggtagagaatgttcaagcatattgccggtgggtgctgcctgtgcc 260

                                                                       
Query: 61  ttcatttctctgagatttaaactaaacagatattaaaggcatttgaaaacaataaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatttctctgagatttaaactaaacagatattaaaggcatttgaaaacaataaaaatg 320

                                                                       
Query: 121 acagctttattcacgtagatgtgagcatacgaatgtgcgtgtgtgtgagtgtgcgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagctttattcacgtagatgtgagcatacgaatgtgcgtgtgtgtgagtgtgcgtgtgt 380

                                                                      
Query: 181 g----ggggggggcacacagggtcatgcacaatgtgtgactgttgctcattagatggtg 235
           |    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgggggggggcacacaggggcatgcacaatgtgtgactgttgctcattagatggtg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 639
Length adjustment: 9
Effective length of query: 226
Effective length of database: 630
Effective search space:   142380
Effective search space used:   142380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)