BAC Information

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BAC

Clone NameMSMg01-095M02
Chromosome5 (Build37)
Map Location 14,853,306 - 14,853,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095M02.T7 (MSMg01no095_m02.b1)MSMg01-095M02.TJ (MSMg01no095_m02.g1)
ACCAG312594AG312595
length658683
length of high quality
(start - end)
297 (31 - 327)595 (60 - 654)
definitionCHROMAT_FILE: MSMg01no095_m02.b1 PHD_FILE: MSMg01no095_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:53 2005CHROMAT_FILE: MSMg01no095_m02.g1 PHD_FILE: MSMg01no095_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGG
TTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGA
TATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTG
TTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTT
TGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGC
CATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGC
TTTTCCCCACTTTCTCCTCTATAAGTTTCACCCCCCCTGGTTTTATGTGA
AGTTCTTTGATCCATTTATATTTGACCTTATTACAATGAGATAAGTATGG
ATCAATACGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATT
TGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTTAGCTCCCTTGCC
GAAGATCTAGTGACCATAGGTGTGCGAATTCATTTCTGGACCTTCCATTC
TATTCCATTGGACTACTTGCCCTGCTCTATACAGTATCATGCTGTTTTTA
CCACCATTGCTCTGTACTAAAGCTTTAGGTCCCGGCCGCTGCTTTCCCCC
TAATTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTTTCCAAAGGAGGTAATCAGAGACGGAGCATGGGGGAAA
TCAGAGGATCTTGGGAGATGCATATGATCCAGTGGCATTATATACATGTA
TTAAAATGTCACAATAAAGCCCAATATTTTTCAGAGTTATTATATACTGG
TAATAATTTTTAAAAAGACACCCGCATAACCCAATCTCAGAAATGGTTTC
ATAAATGGAGGACACCTGTCTCTCTCTTTATAGCTTTGAGGACATGGATC
CAATCACTTGTAATCAGTTTACCCACCTATTCAGGTTTGGTTTCACTTCC
TCCTTTGAGACTCACACAAAGTGATCAATCCAACAAACACAGAAAATGTC
TTCACACCCTGAAGAGATAATGTAACCTTTGTGAATTCCTTGGATGTTAT
ACTGGAGTTTCAGCTGTGGGTCATCAAGACTGTTTATTCTGACTGCTGAC
AACCCCAAGGTGATGAACTAAGGCTGCCAGCTCAAAGGTTTAGCAAGGCT
TTCCAGGGCTGGGTGTGGGCTGTGCTCATTGCTCATTTACTCAGGGCTGA
TGTCTGGAATCCTCTTGTGTTAGCCAACTTTCTCTTTTCTTTGTAAACTT
CTGCATGTGTGATGTGGTCATGGATAGTGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_m02.g1 MSMg01no095_m02.g1 CHROMAT_FILE:
MSMg01no095_m02.g1 PHD_FILE: MSMg01no095_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:53 2005
         (595 letters)



>mm_chr5_14853106_14854100
          Length = 995

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttccaaaggaggtaatcagagacggagcatgggggaaatcagaggatcttgggagat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tctttccaaaggaggtaatcagagacggagcatgggggaaagcagaggatcttgggagat 260

                                                                       
Query: 61  gcatatgatccagtggcattatatacatgtattaaaatgtcacaataaagcccaatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatatgatccagtggcattatatacatgtattaaaatgtcacaataaagcccaatattt 320

                                                                       
Query: 121 ttcagagttattatatactggtaataatttttaaaaagacacccgcataacccaatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagagttattatatactggtaataatttttaaaaagacacccgcataacccaatctca 380

                                                                       
Query: 181 gaaatggtttcataaatggaggacacctgtctctctctttatagctttgaggacatggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatggtttcataaatggaggacacctgtctctctctttatagctttgaggacatggat 440

                                                                       
Query: 241 ccaatcacttgtaatcagtttacccacctattcaggtttggtttcacttcctcctttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatcacttgtaatcagtttacccacctattcaggtttggtttcacttcctcctttgag 500

                                                                       
Query: 301 actcacacaaagtgatcaatccaacaaacacagaaaatgtcttcacaccctgaagagata 360
           |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 actcacacaaagtgatcagtccaacaaacacagaaaatgtcttcacactctgaagagata 560

                                                                       
Query: 361 atgtaacctttgtgaattccttggatgttatactggagtttcagctgtgggtcatcaaga 420
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 atgtaacctatgtgaattccttggatgtgatactggagtttcagctgtgggtcatcaaga 620

                                                                       
Query: 421 ctgtttattctgactgctgacaaccccaaggtgatgaactaaggctgccagctcaaaggt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtttattctgactgctgacaactccaaggtgatgaactaaggctgccagctcaaaggt 680

                                                                       
Query: 481 ttagcaaggctttccagggctgggtgtgggctgtgctcattgctcatttactcagggctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagcaaggctttccagggctgggtgtgggctgtgctcattgctcatttactcagggctg 740

                                                                  
Query: 541 atgtctggaatcctcttgtgttagccaactttctcttttctttgtaaacttctgc 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtctggaatcctcttgtgttagccaactttctcttttctttgtaaacttctgc 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)