BAC Information

Click to search

BAC

Clone NameMSMg01-096P05
Chromosome5 (Build37)
Map Location 74,397,653 - 74,398,115
singlet/doubletsinglet
Overlap geneUsp46
Upstream geneSlc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream gene2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1, EG619945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096P05.T7 (MSMg01no096_p05.b1)MSMg01-096P05.TJ (MSMg01no096_p05.g1)
ACCAG313505AG313506
length713738
length of high quality
(start - end)
463 (61 - 523)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no096_p05.b1 PHD_FILE: MSMg01no096_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:30 2005CHROMAT_FILE: MSMg01no096_p05.g1 PHD_FILE: MSMg01no096_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAATTCTATGGT
CTATCGCCAGATATATCAAAAAATTCAGAATCTGGATATATTTTATTCTA
TCAATCAAGAGAATAACTTGGTGGAGCGCGAGACTCATTCAAGCAGGGAA
ATACTCCAAGCACTAGAGCCGTGGTTTCTCTGCAGACCTCTCCTCCCCCA
CAGTGGCCCGCTGATGTCATCACTATGATGCGCACTGGTCTGGCAGTGTT
AAACTTCCTTCCTTTGTGTTTTTTACATGCAGCACTACTCCTGACTCTGT
TTTGGTCTGAGGTATAGTTAACTGCAGTCGGATTATATAGTCAGATTTAC
ATGAATAACTGTTGCTAATCTTTAAGATTGGGGTGAATGGTTAATGCCGC
TTGTCACGCCCGGCTAAACGAGAGTGATATTTCCTGTAAATGTCACGGTC
CATATTGAGTGTTTGGTAGGCTTCCTGAATGGCTTCTGGGGGCCCCCTTC
CCATGCATTCCTTTGACAGGTCCCTGTAAGCATTGCTACCCGTTGTTAGC
ATGCCTGCCTCCTCTGATGGGAGGAGTTGGGTAGATAGATATTCATCTGC
TAGGGCTGCAACCATATCTTTTAATTTTGTGCCCCTGAAAATGTTCAAAA
GTGACTGGTCTAGATGCCCAACATCCTCCTCCCCTTTGATACAAGGTGAG
TTAAGGCTGTCTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGAGGTTACCTATTTAGTAACATTC
AAATTTACTTCTAGCAGAGACAGGACACACACACACACACACACACACAC
ACACACACACACACACACTAATTAGGCATTACAAAGAATGGAACTAGAAT
AGCTCAGGGCTAGTCTGCAGAGTGATTACTTAGGACTTAGGACAGCATCC
GAGTCTCACCCAAACAAGGGAATACACAATGGCTTAGCCAATAGGTGATT
TTACCATGTAAGAGATAGGGAATCCCACTGAGACAGGTTTCTTCAATAGG
CCGAAAGGAACAGCATAATCAGGCATTTACTAAGAACCCCTGGTGGTGGG
GTTAACAATAGATTAGCATTACACCTGGCTCCCTTCTTAGTGGTAAACAG
CAGACTGGTCCCCACCATCTTTTGATGTATACATTCCTTTTGTGTCACTG
TAACTCAGTGGATGTGTTTGCCTGGCTTTTCTTCTGTATAAAAAAGTCTG
GTGTTCGTTTGGACGATATACTCAGAGTCAACATGCTCTCTCATGTCGAG
TCTGTTTGTCACCCCACCCGCCGATTCTATGCCCATCTGTCTGAGACTCT
GATTTGCACGGATTGCGGAGGGCCCATTTGAGCCCCCTGTCTGTGACCCC
GCCTCTACAACAAACTAGAAAAATGGACCCCTAAGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_p05.b1 MSMg01no096_p05.b1 CHROMAT_FILE:
MSMg01no096_p05.b1 PHD_FILE: MSMg01no096_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:30 2005
         (463 letters)



>mm_chr5_74397453_74398315
          Length = 863

 Score =  797 bits (412), Expect = 0.0
 Identities = 451/464 (97%), Gaps = 2/464 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatatcaaaaaattcagaatctggatatattttattctatcaatcaagagaataacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atatatcaaaaaattcagaatctggatatattttattctatcaatcaagagaataacttg 604

                                                                       
Query: 61  gtggagcgcgagactcattcaagcagggaaatactccaagcactagagccgtggtttctc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtggagtgcgagactcattcaagcagggaaatactccaagcactagagccgtggtttctc 544

                                                                       
Query: 121 tgcagacctctcctcccccacagtggcccgctgatgtcatcactatgatgcgcactggtc 180
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 543 tgcagacctctcctcccccacaatggcccgctgatgtcatcactatgatgggcactggtc 484

                                                                       
Query: 181 tggcagtgttaaacttccttcctttgtgttttttacatgcagcactactcctgactctgt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cggcagtgttaaacttccttcctttgtgttttttacatgcagcactactcctgactctgt 424

                                                                       
Query: 241 tttggtctgaggtatagttaactgcagtcggattatatagtcagatttacatgaataact 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttggtctgaggtagagttaactgcagtcggattatatagtcagatttacatgaataact 364

                                                                       
Query: 301 gttgctaatctttaagattggggt-gaatggttaatgccgcttgtcacgcccggctaaac 359
           ||||||||| ||||||||||| || |||||||||||||||||||||||| | ||||||||
Sbjct: 363 gttgctaat-tttaagattggagttgaatggttaatgccgcttgtcacgtctggctaaac 305

                                                                       
Query: 360 gagagtgatatttcctgtaaatgtcacggtccatattgagtgtttggtaggcttcctgaa 419
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 304 tagagtgatatttcctgtaaatgtcacggtccatactgagtgtttggtaggcttcctgaa 245

                                                       
Query: 420 tggcttctgggggcccccttcccatgcattcctttgacaggtcc 463
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tggtttctgggggcccccttcccatgcattcctttgacaggtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)