BAC Information

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BAC

Clone NameMSMg01-098E01
Chromosome5 (Build37)
Map Location 50,275,377 - 50,275,902
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098E01.T7 (MSMg01no098_e01.b1)MSMg01-098E01.TJ (MSMg01no098_e01.g1)
ACCAG314482AG314483
length571692
length of high quality
(start - end)
210 (32 - 241)526 (55 - 580)
definitionCHROMAT_FILE: MSMg01no098_e01.b1 PHD_FILE: MSMg01no098_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:18 2005CHROMAT_FILE: MSMg01no098_e01.g1 PHD_FILE: MSMg01no098_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCGCAACATCATTCAAAGGATCCGCGAATCTGGAATTCCCCCATTACC
ATAAGAAGCCCTCTAGCCTCTGAAAGCACTTCCAGTCCGACCACAAACCA
GCGGTAATTCCCCACCATCTTGCAACACTTTGTTTTCTTCCTTTTTTAAA
AGAATTTTCTTTATATACATTTCAAATGCTATCCTGGAAGTTCCCTATAC
CCTCCCCCGCCCTGCTCCCCTACCCACCCACTCCACTTCTTTGGGGGGGC
NGGAGGGATTATAGAGTAGGTGTTTGTTAAGTAATCCCTGGTCGCCTCGC
ACGGTTGATACCGGATTTTTATTCCCTACTCCCTTGCCCTTCACCCCGCT
CCCCCTATGACCCTCCATTCCCCCTCTTTTCTCCCCCCTTTTTTTTCCTT
TTTCCTCTAGCCCTCTTCCTACTACGTTCCATCCCTTATTTCTCCCCCCT
CTTTTCCCTCCCCCGCCTTACCCCCTCCCGCCTTCCTCGGCTGTTACCCG
CCTCCCCCCTCCCCCTTGTAGACGCATAACCCCGCCACTTTCCTCGTCTA
TGCCCCCTTTTTTACGTTGCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCCACAGTTTCTAGATGTTCAATTTCCTTTCAATGACTAATGAAA
TAATTGTTTTCAAATGGCAAGTTTCTTCTCAAACCATATCTGAAATACCC
TTTTCCCATGTGATTGGCCTTACAGGATCCAGGGCTTCAGGACAGGATTT
GATGTAGGTTATAATTTTCTTATGAGTGTATGGGTGAAGAGTTGTTCTTT
ATGTATTTTATAGATGCTAACACTGGGGCAAAAATCTTGGATGTGCCCCA
AGAAACTCAAGCTCTGAACTAAAATTACAATTGAATGCCTTTGCCTCAGA
GCCCACAGAATGCTTGGGTTGGTCTTGCAGGTTTGAATGAGCAACATAAG
TCAAGAGAGTGCTGAAGAGAGCACCACTTTCAATGTCATCTTCATGCCAT
GGCCCATGGATCACTTAGTATGGGTTCTTTCATAAAATCTAATCTGAGAG
GAACATGGACAGAACTCATAGCAAAGTTTTATAATTTATTTGTATTAAAT
CAAAGACATGGGTAAGTACATTGATACACATCTGTATCTGGCAATGAGAA
AAGAGTAATTAATTTTTTTGTGGTTCTAAAATTGGATTTTCCTCAAACCA
AATAAATCTTCCTTTTTTGCTCTCATGCTGATGCCACTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_e01.g1 MSMg01no098_e01.g1 CHROMAT_FILE:
MSMg01no098_e01.g1 PHD_FILE: MSMg01no098_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:18 2005
         (526 letters)



>mm_chr5_50275177_50276102
          Length = 926

 Score =  971 bits (502), Expect = 0.0
 Identities = 520/526 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccacagtttctagatgttcaatttcctttcaatgactaatgaaataattgttttcaaa 60
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 726 tcccacagtttctagatgctcaatttcctttcagtgactaatgaaataattgttttcaaa 667

                                                                       
Query: 61  tggcaagtttcttctcaaaccatatctgaaatacccttttcccatgtgattggccttaca 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 666 tggcaagtttcttctcaaaccatatttgaaatacccttttcccatgtgattggccttaca 607

                                                                       
Query: 121 ggatccagggcttcaggacaggatttgatgtaggttataattttcttatgagtgtatggg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggatccagggcttcaggacaggaattgatgtaggttataattttcttatgagtgtatggg 547

                                                                       
Query: 181 tgaagagttgttctttatgtattttatagatgctaacactggggcaaaaatcttggatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tgaagagttgttctttatgtattttatagatgctaacactggggcaaaaatcttggatgt 487

                                                                       
Query: 241 gccccaagaaactcaagctctgaactaaaattacaattgaatgcctttgcctcagagccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gccccaagaaactcaagctctgaactaaaattacaattgaatgcctttgcctcagagccc 427

                                                                       
Query: 301 acagaatgcttgggttggtcttgcaggtttgaatgagcaacataagtcaagagagtgctg 360
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 426 acagaatgcttgggttggtcctgcaggcttgaatgagcaacataagtcaagagagtgctg 367

                                                                       
Query: 361 aagagagcaccactttcaatgtcatcttcatgccatggcccatggatcacttagtatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagagagcaccactttcaatgtcatcttcatgccatggcccatggatcacttagtatggg 307

                                                                       
Query: 421 ttctttcataaaatctaatctgagaggaacatggacagaactcatagcaaagttttataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttctttcataaaatctaatctgagaggaacatggacagaactcatagcaaagttttataa 247

                                                         
Query: 481 tttatttgtattaaatcaaagacatgggtaagtacattgatacaca 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttatttgtattaaatcaaagacatgggtaagtacattgatacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)