BAC Information

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BAC

Clone NameMSMg01-098F08
Chromosome5 (Build37)
Map Location 47,736,444 - 47,736,790
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098F08.T7 (MSMg01no098_f08.b1)MSMg01-098F08.TJ (MSMg01no098_f08.g1)
ACCAG314542AG314543
length750730
length of high quality
(start - end)
337 (44 - 380)372 (73 - 444)
definitionCHROMAT_FILE: MSMg01no098_f08.b1 PHD_FILE: MSMg01no098_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:24 2005CHROMAT_FILE: MSMg01no098_f08.g1 PHD_FILE: MSMg01no098_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTAACCTTTTCTCCATTTAATTTGATGTTGGCCATTGGCTTACTA
TATCCTGCCTTTATTGTATTTTCCTGTGTGCCTTATATCCCTGATCTCTC
CAACACTTTTATCATGAAGGGGTATAGAATTTTCTCAAAGGCTTTTTCAA
CATCTAATGAGATGATCACGTTATTGTTTTTTTTTCCTTTCAGTTTGTTT
AAAAGATGAATTTCATCGACTGACTTTTGTATTTTGAACCACCCCTGCAT
CACTGGGATCAAGCCTACTTTATTTGATGGGTGTTGTTTTTGATGTGTTT
TGGGTTAGATTTGTGAGTATTTTATTGAGCCGTTCTGCCTCACTGCCACT
CCTCGATCCCCCCCCCCATTCTCCTTATTGCTGATCTCCTTGTATGACTT
ATTCCACCATACTGCCCCCTCTTCTTTTTTATACTCTATCTTCCCTTTTG
CTCCTTACACTTTCTCTTATTGCCACAACCCCCGATTATATTTTCCCCAT
TAATTACCTCTATCCCCTCCTACCGCCTTTCTTTTTCTCTCCTTTCCTTC
TACTAGTTATACTACCTGCTCCCCCCCCCCTTTTATTTCCCCCCTCCCCA
TCCCTCTTTCTCCCCCATTTTCCCCACCCCTCCATCTCCTTTTCTCCCTC
CCCACATCTCCTAACCCCTCATTTTAATTCCCTCCTTCATCCTTTTTCTG

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCCTACCACTCCTGTGCAAAGCCAG
ATGTGGTGGCATGTGCTACTAATATCTATAGTGAAGAAACGGAAACCGGA
GGATTCTTGGAGTTGGATGGCCACCTAGCCAACCATACAAAAAACAAGCT
GCTGCTTCCAATTAGATGACTATTTTCAAGAACTAAAGTGGCTATATCCT
ATGGAACAGCATCTGAATGTGGACCTTTGCGTCTCCATATACATATGTGC
ACAGTTGCACGGGCACCTGCATATACATCTGTTCTTATCCAAATAAGGAA
GAAATTCAAAAATGCATGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCGACGGATC
TCTCTCTCCTTTTCCCCCCTCTTTCTCCCTTCCTCTCCTCCTCCTCTTTC
CATTCCTTTTTTCCCCTTATTCTCTCCCCTTCCCTCCCCCTCTTCTCTCT
CCTAATCCTTTCCCTCTTTCTCCCCTATTCCTCCCCTTTTTTTATTATTT
CTCCCACTCCCCTTTCCCTTTCCTTTTTTTCCCTCCCTCCCCCCCCCCTA
CATATCTACTTCCTTTTTCTTCCTCCTCCTCCCCCCCCCCTCTTTTTCCC
CCCTCTCCCTCCCACCCTTCTCTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_f08.g1 MSMg01no098_f08.g1 CHROMAT_FILE:
MSMg01no098_f08.g1 PHD_FILE: MSMg01no098_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:24 2005
         (372 letters)



>mm_chr5_47736234_47737005
          Length = 772

 Score =  586 bits (303), Expect = e-172
 Identities = 336/347 (96%)
 Strand = Plus / Plus

                                                                       
Query: 11  actcctgtgcaaagccagatgtggtggcatgtgctactaatatctatagtgaagaaacgg 70
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 211 actcctgtgcaaagccagatgtggtggcatgtgctagtaatatctatagtgaagaaacag 270

                                                                       
Query: 71  aaaccggaggattcttggagttggatggccacctagccaaccatacaaaaaacaagctgc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaccggaggattcttggagttggatggccacctagccaaccatacaaaaaacaagctgc 330

                                                                       
Query: 131 tgcttccaattagatgactattttcaagaactaaagtggctatatcctatggaacagcat 190
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 331 tgcttccaattagatgactattttcaagaagtaaagtggctatatcctatggaacagcat 390

                                                                       
Query: 191 ctgaatgtggacctttgcgtctccatatacatatgtgcacagttgcacgggcacctgcat 250
           ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 391 ctgaatgtggaccattgcgtctccatatacatatgagcacagttgcacgagcacctgcat 450

                                                                       
Query: 251 atacatctgttcttatccaaataaggaagaaattcaaaaatgcatggaaggaaggaagga 310
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 451 atacatctgttcttattcaaataaggaagaaattcaaaaatggatggaaggaaggaagga 510

                                                          
Query: 311 aggaaggaagaaaggaaggaaggaaggaaggaaggaaggaaggaagg 357
           |||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 511 aggaaggaaggaaggaaggaaggaaggatggaaagaaggaaggaagg 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)