BAC Information

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BAC

Clone NameMSMg01-098H13
Chromosome5 (Build37)
Map Location 99,077,713 - 99,078,195
singlet/doubletsinglet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H13.T7 (MSMg01no098_h13.b1)MSMg01-098H13.TJ (MSMg01no098_h13.g1)
ACCAG314645AG314646
length702694
length of high quality
(start - end)
487 (36 - 522)498 (55 - 552)
definitionCHROMAT_FILE: MSMg01no098_h13.b1 PHD_FILE: MSMg01no098_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:36 2005CHROMAT_FILE: MSMg01no098_h13.g1 PHD_FILE: MSMg01no098_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAT
GCTCACCACAATACATAGATGTCTTTCACCATTATAATTTACACTCACAC
ACACGCGCGCGCGCGCACACACATACATACACACAAACACACACATACAT
ACATACACACACACACACACACAGAATTTCATATAAGACTAAGATTATGA
TGTCATAGCCACTTGTAAAGAATATTGAATTATTTAATGTCTATTATGAC
CATTTTTTTACACCTAATTATTGCAGCCATAAAAGAAAGCATTTCCTTTT
CCCTGTTTGCATTTTGTCCTCATGTAATTGATGGATAGCAATTTTAATGT
TTCTAGCTTGGGCATTTAATTCTCAGGTAAAGTGTATTCACTTTCTCATT
TTCATACAACATATCAACATTTCAGATTTCAAGAGTGCAGTTTATCATTA
AACTCACAGATTTGCTCTGTTAATAATAGTCTCAGGAAGTATGCACGATT
GAGGTTTTTTTTTTTTTAAGAATTAAACTGCAAGCAAAATTCCATTGTAT
CTTAGTTCACAGCAGAGTCCTCCTATATTTTCTTTTGTTTAAAAACAAAT
ACTGCAACGGCGACCACCCAGAAAGAAAAGACATGTTACTACCTGGATAC
GGGAAGAGGAAAAAAAAGTTTGGTCAAACACACGTCCTTGTTTATACTAC
CA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACTTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTT
CACCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAGGAAGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACGTAGTAATACCAGAGGATCCCGCAGTACCTCTCCTGGGCAT
ATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGG
AACTCACACAATACGTACTCATTGATAAGTGAATATTAGCCCAGAACCTT
ACGATACCCCGATATAAGATCACAATTTGCTCAACGCCTGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h13.b1 MSMg01no098_h13.b1 CHROMAT_FILE:
MSMg01no098_h13.b1 PHD_FILE: MSMg01no098_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:36 2005
         (487 letters)



>mm_chr5_99077608_99078491
          Length = 884

 Score =  772 bits (399), Expect = 0.0
 Identities = 460/497 (92%), Gaps = 32/497 (6%)
 Strand = Plus / Minus

                                                                       
Query: 9   tctatatgctcaccacaatacatagatgtctttcaccattataatttacactca----ca 64
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    ||
Sbjct: 588 tctatatgcttaccacaatacagagatgtctttcaccattataatttacactcacgcgca 529

                                                                       
Query: 65  cacacgcgcgcgcgcgcacacacatacatacacacaaacacacacatacatacatacaca 124
           |||||||||||||||||||||||  ||||||||||||||||||||||||||||||     
Sbjct: 528 cacacgcgcgcgcgcgcacacac--acatacacacaaacacacacatacatacat----- 476

                                                                       
Query: 125 cacacacacacacagaatttcatataagactaagattatgatgtcatagccacttgtaaa 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 -acacacacacacagaatttcatataagactaagattatgatgtcatagccacttgtaaa 417

                                                                       
Query: 185 gaatattgaattatttaatgtctattatgaccatttttttacacctaattattgcagcca 244
           ||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||
Sbjct: 416 gaatattgaattatttaatgtctattatgacca-ttttttacacc--attattgcagcca 360

                                                                       
Query: 245 taaaagaaagcatttcc--------------ttttccctgtttgcattttgtcctcatgt 290
           |||||||||||||||||              ||||   | |||||||||||||||||| |
Sbjct: 359 taaaagaaagcatttcctttttttttttttttttt---tttttgcattttgtcctcattt 303

                                                                       
Query: 291 aattgatggatagcaattttaatgtttctagcttgggcatttaattctcaggtaaagtgt 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aattgatggatagcaattttaatgtttctagcttgggcatttaattctcaggtaaagtgt 243

                                                                       
Query: 351 attcactttctcattttcatacaacatatcaacatttcagatttcaagagtgcagtttat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 attcactttctcattttcatacaacatatcaacatttcagatttcaagagtgcagtttat 183

                                                                       
Query: 411 cattaaactcacagatttgctctgttaataatagtctcaggaagtatgcacgattgaggt 470
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 182 cattaaactcacagatttgctctgttaataatagtctcaggaagtatgcatgattgaggt 123

                            
Query: 471 ttttttttttttaagaa 487
           |||||||||||||||||
Sbjct: 122 ttttttttttttaagaa 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 884
Length adjustment: 10
Effective length of query: 477
Effective length of database: 874
Effective search space:   416898
Effective search space used:   416898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)