BAC Information

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BAC

Clone NameMSMg01-098H20
Chromosome5 (Build37)
Map Location 40,493,400 - 40,493,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H20.T7 (MSMg01no098_h20.b1)MSMg01-098H20.TJ (MSMg01no098_h20.g1)
ACCAG314656AG314657
length761752
length of high quality
(start - end)
454 (115 - 568)285 (134 - 418)
definitionCHROMAT_FILE: MSMg01no098_h20.b1 PHD_FILE: MSMg01no098_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:37 2005CHROMAT_FILE: MSMg01no098_h20.g1 PHD_FILE: MSMg01no098_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
CCCCCCCCNTTTCCCCCCNTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCAAGAAGAGGTCCGCGGAATTCTATATGCCTTAAGTGACTGAGGTC
CCACTGGACAGCCCTTGATACAGATAGAGTCTATTAGCAGGACAATTTCA
GTAATGGCGAAAGTCAGATCAGCATACTGGAAGTACCTTTCAGAGTGACA
TTGTCACACATCTGGTCAAACAAATTAATATTCCCATCTGGAACAGTGCT
TTTGGCAGGAACAGTTAGTACTAAAAATCACATGACTCCTGAGTTTATAA
AACAAAACAACAAAAAATGTGTTAGTGTTTGCCATCAGTCTAAGAAAATG
AAGCCTTTTATCTTTCTGGATCCTCAGTCATTTTTAACTTCCACTAGGCT
ACCTCTTATGTTTCCCTTGGCCATGTATGTCCTTTGCTATAGCAAGTTTC
GCTGGAAAGCATCAGGATACACTAGACCAATAATTACTTTTACATAAACT
TTGCCTTGATATTAAAAGGACCAATACATATGAATAAAACACTTGTGAAA
ACTACTACTGAGACCAATTAGGGACTGGGGAAGGTCCCCATCCAGTTCCC
AGTAGCTATTTCCTACAGAGAATGCCTTCTTCCTGGAAGTCTCCTTTCTG
GGTATGTGCAGCCTCCTCACCTGAAACATAATATGATCCTTTGCCCTATC
CGAAGGACTTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCNNNNCTTCTTTT
GTCCCCCCTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAAGACT
TTTAGATGAAAAGGTATAGTATTTTGCCGAAGACTGTCTCAGCACATAAT
GAGGTAATCATGTGACATTTTTTCTTGAGTTTGTTTATATAATGTATTAC
ACTGAATGATTTTCATATATTGAACCAACCCTGCATCCCTTACATGAAGC
CTACTTGATTGTGTTAAATGATGCTTTTCATTTGTTCTTGGATACAGTTT
GCAAGAATTTTATTGAATATTTTTACTTCAGTATTCAGAAGTGAATTTGA
CCTGAAGTTCTCTTTCTTTTGGGCGCCTTTGTGTGGCTTAACTATCATAG
TAACTGTGGATTCAAAGAACTAATTAGGAAACATTCCTTCTGTTTCTATT
TTGTGAAATAATTTGAGGAATATTGATATTAGCTCTTCTTTGAAGGTCTG
GCAGAATCCTGAACTAAAACCATCTACCCCTGGACTTTGATTGCAAGACT
TTTAATGACTATTTCTATTCGCTTATGGTTAATAGGACTTGTTTATATAG
TATACCTGAATCTCGATTTACATTTGTTGTGTGGTAACCCGCTTAATACA
TCAGCCATTTGATCCAGATTTCCCAGTCTACGCACAGTATCCGCCTTCTG
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h20.b1 MSMg01no098_h20.b1 CHROMAT_FILE:
MSMg01no098_h20.b1 PHD_FILE: MSMg01no098_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:37 2005
         (454 letters)



>mm_chr5_40493194_40494048
          Length = 855

 Score =  814 bits (421), Expect = 0.0
 Identities = 442/449 (98%), Gaps = 1/449 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctatatgcctta-agtgactgaggtcccactggacagcccttgatacagatagag 65
           ||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 207 gaattctatatgatttacagtgactgaggtcccactggacagccattgatacagatagag 266

                                                                       
Query: 66  tctattagcaggacaatttcagtaatggcgaaagtcagatcagcatactggaagtacctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctattagcaggacaatttcagtaatggcgaaagtcagatcagcatactggaagtacctt 326

                                                                       
Query: 126 tcagagtgacattgtcacacatctggtcaaacaaattaatattcccatctggaacagtgc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcagagtgacattgtcacacatctggtcaaacaaattaatattcccatctggaacagtgc 386

                                                                       
Query: 186 ttttggcaggaacagttagtactaaaaatcacatgactcctgagtttataaaacaaaaca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttggcaggaacagttagtactaaaaatcacatgactcctgagtttataaaacaaaaca 446

                                                                       
Query: 246 acaaaaaatgtgttagtgtttgccatcagtctaagaaaatgaagccttttatctttctgg 305
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 acaaaaaatgtgttagtgtttgccatcagtccaagaaaatgaagccttttatctttctgg 506

                                                                       
Query: 306 atcctcagtcatttttaacttccactaggctacctcttatgtttcccttggccatgtatg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atcctcagtcatttttaacttccactaggctacctcttatgtttcccttggccatgtatg 566

                                                                       
Query: 366 tcctttgctatagcaagtttcgctggaaagcatcaggatacactagaccaataattactt 425
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcctttgttatagcaagtttcgttggaaagcatcaggatacactagaccaataattactt 626

                                        
Query: 426 ttacataaactttgccttgatattaaaag 454
           |||||||||||||||||||||||||||||
Sbjct: 627 ttacataaactttgccttgatattaaaag 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space:   375180
Effective search space used:   375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)