Query= MSMg01no098_m07.b1 MSMg01no098_m07.b1 CHROMAT_FILE:
MSMg01no098_m07.b1 PHD_FILE: MSMg01no098_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:59 2005
(540 letters)
>mm_chr5_135257582_135258526
Length = 945
Score = 913 bits (472), Expect = 0.0
Identities = 509/524 (97%), Gaps = 5/524 (0%)
Strand = Plus / Minus
Query: 22 cacccagacctccagctgagccccaagaacaaggctatcgtccttcgttgtgttacgaac 81
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 929 cacccagacctccagctgagccccaagaacaaggccatcgtccttcgttttgttacgaac 870
Query: 82 aaaagatgagacatttcaattgtcaacactggcatttgggaaggctctggaccagtgtct 141
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 869 aaaagatgggacatttcaattgtcgacattggcatttgggaaggctctggaccagtgtct 810
Query: 142 ccaggtgataatagactctactcagggagcaggagatggctcagggatgaaggcacctgc 201
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 809 ccaggtgataatagactctactcaggaagcaggagatggctcagggatgaaggcacctgc 750
Query: 202 tgccaagccagaatggctctgcacgacccacatggttggaaccagctcctgcaagtttac 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgccaagccagaatggctctgcacgacccacatggttggaaccagctcctgcaagtttac 690
Query: 262 acacacacacacacacacacacacacacacacacacacacacacttaaaaggtaattaaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acacacacacacacacacacacacacacacacacacacacacacttaaaaggtaattaaa 630
Query: 322 aactaaa-----tataatataatcaagtaattgcagggcttagaagctcctcgaggggcc 376
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aactaaacataatataatataatcaagtaattgcagggcttagaagctcctcgaggggcc 570
Query: 377 ctgcctaggcaggtgtggaccagccgggctctgtcaatcactgaccaggcgcgacacatt 436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 569 ctgcctaggcaggtgtggaccagccgggctctgtcaatcactgaccaggcgggacacatt 510
Query: 437 ataacttgaagttaactcgtccaacaggagtgttcatttcctccgtagcctgttcctttc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ataacttgaagttaactcgtccaacaggagtgttcatttcctccgtagcctgttcctttc 450
Query: 497 tgcatcttccccatctcaggaaatggcaccatcgcccgcccagt 540
|||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 449 tgcatcttccccatctcaggaaatagcaccatcacctgcccagt 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 945
Length adjustment: 10
Effective length of query: 530
Effective length of database: 935
Effective search space: 495550
Effective search space used: 495550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_m07.g1 MSMg01no098_m07.g1 CHROMAT_FILE:
MSMg01no098_m07.g1 PHD_FILE: MSMg01no098_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:59 2005
(365 letters)
>mm_chr5_135147531_135148295
Length = 765
Score = 640 bits (331), Expect = 0.0
Identities = 358/367 (97%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 1 cctgggtgctgggcctcagcgtggaattccagttcgtaaacctaagtcgggctgggggag 60
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggtgctgggcctcagcgtggcatcccagttcgtaaacctaagtcgggctgggggag 260
Query: 61 aggtggacggtgccctcgcttggtgcaactgtggcctgcagcaccgtttgcagttctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggacggtgccctcgcttggtgcaactgtggcctgcagcaccgtttgcagttctgtg 320
Query: 121 agttagttatccagcacaccatcaaacatgaggccactgggctggaagggcctggggacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttagttatccagcacaccatcaaacatgaggccactgggctggaagggcctggggacg 380
Query: 181 cctgagtgtgcagctggtgtctgcagcaggaacagacccgctagggatggtgtctgtagt 240
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct: 381 cctgagtgtgcagctggtgtctgcagcaggaatagacccgctagggatgttgtctatagc 440
Query: 241 tagtggggtctgtgccagctctgtggctagaggcagagctacgctgcagaggcagaaagt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tagtggggtctgtgccagctctgtggctagaggcagagctacgttgcagaggcagaaagt 500
Query: 301 agagagctggtgctgggggcactttggtttcagtcattttctttctttcttt-ttttt-t 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 501 agagagctggtgctgggggcactttggtttcagtcattttctttctttctttctttttct 560
Query: 359 ttttttt 365
|||||||
Sbjct: 561 ttttttt 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
