BAC Information

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BAC

Clone NameMSMg01-099L08
Chromosome5 (Build37)
Map Location 96,417,033 - 96,417,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneCnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099L08.T7 (MSMg01no099_l08.b1)MSMg01-099L08.TJ (MSMg01no099_l08.g1)
ACCAG315582AG315583
length697735
length of high quality
(start - end)
161 (79 - 239)67 (227 - 293)
definitionCHROMAT_FILE: MSMg01no099_l08.b1 PHD_FILE: MSMg01no099_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:19 2005CHROMAT_FILE: MSMg01no099_l08.g1 PHD_FILE: MSMg01no099_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTAATGTCCCAGATGAAGAAAGAGTGATCCACATTGATCAA
TAGTCTGGCCCAAGTCTCATGCTTCCTTCTGCGATATTCAATATGTCACC
TGTTCCTAATATTCATATAACACACACTGCAGAAGATACACAAGTCCAGT
CCTGGAGCTTTTCACAAAATCTAATTTTCTATGAAAACTGGACAAATAGT
CAAAATTACATACAAATGAAATAATGTCCTAATTTAGCAATCTTGTCTTT
ATGGAGCTTAGTCTACTTCAGTCTTTGACTCAACCCTTCACACTATTCTG
ATAGGATTAGAGACTGACGATATCAGGATTTTAGCTCTGACACACAAAAT
GGCAAGCTGCCTAATTTCTCCCTCCTTTCGGTCTAATTTCTCCTACTTAA
GAAGTTATAAGAGTCTGTAATTTCACTCAGGCTTGAACAGCCAAACTTTT
GACAGTGTATCATGTTGCCTCTGGTCTACAAATTCTCCGATACTCTAGGA
CTAGGCATGTCCCATATGCCCCATTTTGCCGTGACTAGAGAAACTCTCTC
TAATATGCTCATCACAGACTATATGGAGCTGACTCATCAAGTCTTTCTAG
TGACTTCTTCATTCTTTTGTTTATTACACCCTGCCTTACATTATGTC
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATACAGTAAATCTGCTCAAGAT
TTATGATGTTTTATGTAAAAAAAATTTTGCACTACATAGCTGAATATTTT
TGTTTGATTTATTTGATGTAAGGCGCGCGAACATTCTTTTGACTACTCCA
TGTTAAATGTCATGTATGGCCCAATGGGCTCTGAGACCAGCTTCCCCCCG
CACCCCCCCCCATTTGCCTTGTTCTAATCTCTTTCTTTTCAAATTGCGTT
TCTAGTATTCATAAGCATATATTTCATTTTACTAATAAGCATCCTGCGTG
AATGTACTTTAAAATCCACTATGCTTCACTGTTATGGTTTGTAGAATTAT
GAAACTTACCTTCTCCCCCTCCTTTTTATGTCTTAAAGTCATAAATCACT
GACAATGTATAAAGTTAACATCCAAGACTCATATCACTTGAATCTGTGGC
ATATTATTGTCATAACTGAGTCTGTTCTTATTAAATCCTACCCCATGCAC
CTCATCTGTGCTCGCTTACACACCCTCGTCTCCCCGATTATGTTCTTAGC
CACCACCCCGAAACTTTTAATTTCTGCCATCTGTACTTCCCAAGTAATTA
TCCCCCCTCCCTCCTACTATCCTCCTTGTCTTATTTTCCCTACCTCCTAT
ACCCCTAATCTTACACGCTAATTACCCCTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_l08.b1 MSMg01no099_l08.b1 CHROMAT_FILE:
MSMg01no099_l08.b1 PHD_FILE: MSMg01no099_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:19 2005
         (161 letters)



>mm_chr5_96416833_96417393
          Length = 561

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtgatccacattgatcaatagtctggcccaagtctcatgcttccttctgcgatatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aagagtgatccacattgatcaatagtctggcccaagtctcatgcttccttctgcaatatt 260

                                                                       
Query: 61  caatatgtcacctgttcctaatattcatataacacacactgcagaagatacacaagtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatatgtcacctgttcctaatattcatataacacacactgcagaagatacacaagtcca 320

                                                    
Query: 121 gtcctggagcttttcacaaaatctaattttctatgaaaact 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctggagcttttcacaaaatctaattttctatgaaaact 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)