BAC Information

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BAC

Clone NameMSMg01-100A11
Chromosome5 (Build37)
Map Location 26,664,478 - 26,664,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream gene4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100A11.T7 (MSMg01no100_a11.b1)MSMg01-100A11.TJ (MSMg01no100_a11.g1)
ACCAG315827AG315828
length781696
length of high quality
(start - end)
199 (106 - 304)423 (55 - 477)
definitionCHROMAT_FILE: MSMg01no100_a11.b1 PHD_FILE: MSMg01no100_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:46 2005CHROMAT_FILE: MSMg01no100_a11.g1 PHD_FILE: MSMg01no100_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCGNNNNNNCCCCTGGNCCCCCTGCGNCCCTCNCCTCCNCCTCTAT
CCNCCCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGTTCACTTCTGAGCCCCATCTTTTAATGGGGTT
ATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGCGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTG
GAGCTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCTAGGCTT
TTCCCCACTTTCTCCTCTATAACTTCCCCCGTCTCTGGCTTTATGTGAAC
TCCCTTGACCCACTTACATTTCACCTTAGTACACGGAGATATGTATGGCT
CGCTTTGCATTCTTCTATATGATGACTACCTGTTGTGCCAGATCCCATTG
TTGAAACTGCCGCCTTCCCTTCCCCTGCACGTTCTCACCTTCCCTTGTCG
AATATCTATCGACCATCTTTGCGTGTGTTCCCTCCCCTCCTCCTCACCCC
CCATCCCCTGGCCCCACTGTTTCCCCGCCTGTACCGCCTTCTGCACTCTC
TCCTCTTTCTTGCATCTCTCGTTGCCGTTTTCCTCCCTGCACTGACTACT
TCCCCCCACGCCTTTCCTTCTTTTCCCTTTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCGGGGATGAATAGGCTACACAGCTGATATCAGGATGCTGCTGGTT
GAACTCTGAGGCTCATGTTGCTTCTGATCCATCAGGGATACTGTGGTCCT
CTGCCTCTGTTTCTTGAGGTTAGGACAATGCAAGGACAGGGAGATGAATC
AAAGCTAGAACTGCACAGAGCTGTATTCTCCTTTTTCCTCTGTAGAGGCA
GACTTTATTATTTTTTAAGTTTCTCAATGGTATCAGTGGCCCAGATGAGC
TTCTTTGACATGGCTTGCTGTACTGGCTTTATACTAGAGAATTTGATCTT
GTCTGATTACAGTGTTTGACTCTGAATACTTACTGTGCCGACCCAAAGAT
GGTGCTCATACTGAAGAGTCTGGGCTGAGTAGCCTGGCAGGTTATTTTTC
TGAAATGATGACAGACTTTGCTCAGACACAAAATCTCTAGACATTATACA
GAGAGAACACCATGACAGATGTCACATATGTATCTGTGCCATCCACCTGG
AGGTGGCACAGCAAGTTCCTTTCCCTTAAGTGTATGTGCTTGCAAAATTC
TCTATATTCTTCCTTAAAATTCGAGCTTTTCTGTTATCGCTTGGAAGGTG
CTTACTCTATCTAGAGGGCTTCACATCTTTAACTATTGTCCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_a11.g1 MSMg01no100_a11.g1 CHROMAT_FILE:
MSMg01no100_a11.g1 PHD_FILE: MSMg01no100_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:46 2005
         (423 letters)



>mm_chr5_26664278_26665100
          Length = 823

 Score =  779 bits (403), Expect = 0.0
 Identities = 418/423 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcggggatgaataggctacacagctgatatcaggatgctgctggttgaactctgaggctc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggggatgagtaggctacacagctgatatcaggatgctgctggttgaactctgaggctc 260

                                                                       
Query: 61  atgttgcttctgatccatcagggatactgtggtcctctgcctctgtttcttgaggttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttgcttctgatccatcagggatactgtggtcctctgcctctgtttcttgaggttagg 320

                                                                       
Query: 121 acaatgcaaggacagggagatgaatcaaagctagaactgcacagagctgtattctccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatgcaaggacagggagatgaatcaaagctagaactgcacagagctgtattctccttt 380

                                                                       
Query: 181 ttcctctgtagaggcagactttattattttttaagtttctcaatggtatcagtggcccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctctgtagaggcagactttattattttttaagtttctcaatggtatcagtggcccag 440

                                                                       
Query: 241 atgagcttctttgacatggcttgctgtactggctttatactagagaatttgatcttgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 atgagcttctttgacatggcttgctgtactggctttatactagaggatttgatcttgtct 500

                                                                       
Query: 301 gattacagtgtttgactctgaatacttactgtgccgacccaaagatggtgctcatactga 360
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct: 501 gattacagtgtttgactctgaatacttactgtgctgaaccaaagatggtgctcatacaga 560

                                                                       
Query: 361 agagtctgggctgagtagcctggcaggttatttttctgaaatgatgacagactttgctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtctgggctgagtagcctggcaggttatttttctgaaatgatgacagactttgctca 620

              
Query: 421 gac 423
           |||
Sbjct: 621 gac 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)