BAC Information

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BAC

Clone NameMSMg01-100J19
Chromosome5 (Build37)
Map Location 137,345,379 - 137,345,556
singlet/doubletsinglet
Overlap geneEmid2
Upstream geneHspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl
Downstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100J19.T7 (MSMg01no100_j19.b1)MSMg01-100J19.TJ (MSMg01no100_j19.g1)
ACCAG316263AG316264
length813787
length of high quality
(start - end)
---173 (132 - 304)
definitionCHROMAT_FILE: MSMg01no100_j19.b1 PHD_FILE: MSMg01no100_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:32 2005CHROMAT_FILE: MSMg01no100_j19.g1 PHD_FILE: MSMg01no100_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCGCCNGGCCTGNTGGGGGCGGGCTCGCCGCTCCCCCCCTTAT
TACCTAATCTATAATTTGCGGCCCTAAACGACCACGATCGGGAANGACCG
CGGAANCCAGGTTTCCCAGAAAGGGGAGNCCNGGGGNGGAANNCAGAGGC
NNNCGGNANNCNAGGNAAGCCCCCCACCAACAGGGCACCAGCCCCAGCCC
CCAGAAGGCAGAGCCAAGCACAGACAGCCCGGACCCAGCAGCCAAACAAG
ACACGGACGGACAGGAGNCGCGCGCCGCGCAGCCCGGCCCCGCAGGAACC
ATTTTACGGCCCAGGAAGGACACAACCACGCAGGCGGACAACGAGCCGAC
CCGCAAGCCGCCGCCTTTTTTTTTTTACCGCACCCAGGGAGAAGCAGAAA
CCACCAGGGCATGGCCCCCCCCACCCCCCCCAGACACGGCACGCACAGAC
CCCACCACAGCGACCCGAAAAAAAACACACGACCCACAAACCAGCAGCGG
AGCACAAGAAGAGCACGCACCACCCCGCGCACCCAAGGACCGCGACGCGC
CCCAACCCAAGACCCCCCCCACAACAGACGAAAAAGGCGGGCAAAGCACC
CAGCGCGGGGCCAGAACAGGACCACCGAGCCCGGCGGGGCCCAGCCCAGA
ACACCCCCGGAAAACCACCCGACGGCGCAAGCCCCAAAAACCGCGGCCAA
AGGGGGCCCCGAACCACGGCGCCCCAGAAACCAACACGCCCATCGATTTT
TTTTTAGTGTTTTTACTCTCACACCGAGCATTGCCGGCCACTTACACGCC
CTCACCCTTACCG
CCCCCCCCCCCCCCCCNCCCCCTCCCCCCCTCCCCCCTTTTTTTTTTTTT
TCTCTTCCTATGATATGCGTAGCCTGGAGGCCGCCTTTTCTCAGCTGTAG
GNGAACTATAGATTTTCTAAACAATTCTGCGAGGAGCCAGAAATGGAACC
AAATGTTGGTGTCAGGTAGAGGAAGCTGGTGGGTGTCTGTGGCTCAGCTA
GGCAGCTGTGAGGGCGCAGGCTCCTGGGGCCAGGACAGATGTGTAGGTGA
GGCTCACTCATGTTCTATTTTTAAAAGTTCTGGCACATGCGCCTGTGTGT
GTGTGCATACCACTGTGTGGAGACCACAATTCAATCGTGGTTGTTGCTAT
TCCAGCTCATACCTCGAATTTTTTTTTTGCCCCCGACTTATTTTTTGACT
ATTGATTGATTGTTTGATTGCCCGCACGCGCGTGCATTGAGAGCGCCGGT
CTGCCTACATGTTCCCCCCCTCTATGATGTTGCCTATGCCTGCTTAGGAC
TTATGATGGTTTCCTCGATTCTCACTATTTACTTATCAGTCCCCTACCAT
TTTCCTCCCCCGGCCCCACCCCCTCCTTCTCTCTTTATTTTTACTCCCCT
TTCATTTTCTACTTTTCCCCTTCCCTACAACCCCCCCTTTTTACTACATT
CTCATTATACTTCTCTCCACTCCCGTAATGTTTCTCCCGCTCCCCCTTCT
TTTCCTCCCCATCTTCTCCCCTTTTCCTTTTTCCCTTTCATCCCCTCAGC
GACCCCTCCTCTCTCCCTTTTCCTTCTCCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_j19.g1 MSMg01no100_j19.g1 CHROMAT_FILE:
MSMg01no100_j19.g1 PHD_FILE: MSMg01no100_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:32 2005
         (173 letters)



>mm_chr5_137345179_137345756
          Length = 578

 Score =  294 bits (152), Expect = 2e-84
 Identities = 170/178 (95%), Gaps = 5/178 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagccagaaatggaa-ccaaatgttggtgtcaggtagaggaagctggtgggtgtctgt 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aggagccagaaatggaagccaaatgttggtgtcaggtagaggaagctggtgggtgtctgt 319

                                                                       
Query: 60  ggctca----gctaggcagctgtgagggcgcaggctcctggggccaggacagatgtgtag 115
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggctcagcaggctaggcagctgtgagggcgcaggctcctggggccaggacagatgtgtag 259

                                                                     
Query: 116 gtgaggctcactcatgttctatttttaaaagttctggcacatgcgcctgtgtgtgtgt 173
           ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 258 gtgaggctcactcatgttctatttttaaaagttctggcacatgtgcgtgtgcgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 578
Length adjustment: 8
Effective length of query: 165
Effective length of database: 570
Effective search space:    94050
Effective search space used:    94050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)