BAC Information

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BAC

Clone NameMSMg01-100O20
Chromosome5 (Build37)
Map Location 114,485,407 - 114,485,654
singlet/doubletsinglet
Overlap geneSvop
Upstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1
Downstream geneUsp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100O20.T7 (MSMg01no100_o20.b1)MSMg01-100O20.TJ (MSMg01no100_o20.g1)
ACCAG316481AG316482
length773775
length of high quality
(start - end)
248 (131 - 378)291 (143 - 433)
definitionCHROMAT_FILE: MSMg01no100_o20.b1 PHD_FILE: MSMg01no100_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:57 2005CHROMAT_FILE: MSMg01no100_o20.g1 PHD_FILE: MSMg01no100_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCTCCCCCTTTCCCCCCTA
TCCCNCNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGA
GGATCCGCGGAATTCCAGTCTTCCCCGATAGGGGGTTGCGATGCTGTGAA
GACAGGCTCAGGGAAGCGCCCCGAGCAGAAGACACAGCACTAGCGTGACC
TCTGTGAACCTTGCTTCTGCCCACTAGTGAATTTTTATGCATTTTCTCCC
ATTTTGAGGTAGGCTGTGTTGGCCTAGAGAGCAGAGAGATGGACTGCCTA
GTGGCCAATGGAATCCCAGGGCTGTGTTACATCAGACAGACAGACAGACA
GACAGACAGACACAGACACACACACACACACTTTTACACACACACACACT
CGCTAACACAGGCAGTATACACTAAGGTGACTACTGGTTTCTCCCATGTG
ATAATGAGCCCTCTGTATCATTACCACCCCCAAATTGCCTGCTCCCTCCA
CACCACGAACTGTCATCTGGGAAACCCAACCCCCCGCAAAGACACCGAAG
ATGCCTATTAAAGCCTCTTCCAGGGAGAGTTTGATCGGGTCCTGAGATTC
TTGCTCTTCCCCTCCCGGGACCCCATCTCCTGACCAAGCCCCTCCCTTAA
CTACACCCCTACCACATGGACGCCGAACATCCCCCCGCGTGGCTGTGCCT
GCTTCCTGTCTCCTTGAAAACCTTCCCCCACCCTGCGCAATGTGCCTTTG
CCCCTTTTCCCTCTGTCTTTCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCTCTCCCCCTTTN
NCCACTATAATTNNCCCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACGC
GGGTAAAAAGGCCAGCTGGGATGCCCCCAAAGCATGGGGACTAAGACTGT
ATCGATCCACAGGGACCGACCCGGTGACCCTGTTCTCTTTGACCCGCCAG
GTCCTCAATGTAGGACCCCGCGTCCCCATTGGGCCTAATCCCGTGATCAC
TGAACAGCTACCCCCCTCCCAACCCGTGCAGATCATGGTCCCCAGGCCTC
CTCATCCTCCTCCTTCAGGCGCGGCCTCTATGGTGCCTGGGGCTCCCCCG
CCTTCTCAACAACCTGGGACGGGGGACAGGCTGCTAAACCTGGTAGAAGG
AGCCTACCAAGCACTCAACCTCACCAGTCCCGACAAAACCCAAGAGTGCT
GGCTGTGTTTGGTATCGGGACCCCCCTACTACGAAGGGGTGGCTGTCCTA
GGTACTTACTCCAACCATACCTCTGCCCCGGCTAACTGCTCCGTGACCTC
CCAACACAAGCTGACCCTGTCCGAGGTGACCGGGCAGGGACTCTGGGTAG
GATCAGTTCCCAAAACCCATCAGGCCCTGGGGAATACCCCCCCAAGACGA
TCGGACGGCTCCTACTATTTGGCCTCTCCCGCCGGAACCATTTGCCCTTG
CCTCACCGGTTTCCCTCCCTGTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_o20.b1 MSMg01no100_o20.b1 CHROMAT_FILE:
MSMg01no100_o20.b1 PHD_FILE: MSMg01no100_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:57 2005
         (248 letters)



>mm_chr5_114485207_114485854
          Length = 648

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggggttgcgatgctgtgaagacaggctcagggaagcgccccgagcagaagacacagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggggttgcgatgctgtgaagacaggctcagggaagcgccccgagcagaagacacagcac 260

                                                                       
Query: 61  tagcgtgacctctgtgaaccttgcttctgcccactagtgaatttttatgcattttctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcgtgacctctgtgaaccttgcttctgcccactagtgaatttttatgcattttctccc 320

                                                                       
Query: 121 attttgaggtaggctgtgttggcctagagagcagagagatggactgcctagtggccaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttgaggtaggctgtgttggcctagagagcagagagatggactgcctagtggccaatg 380

                                                                       
Query: 181 gaatcccagggctgtgttacatcagacagacagacagacagacagacagacacagacaca 240
           |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 381 gaatcccagggctgtgttacatcagacagacagacagacagacacacacacacacacaca 440

                   
Query: 241 cacacaca 248
           ||||||||
Sbjct: 441 cacacaca 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)