BAC Information

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BAC

Clone NameMSMg01-101B13
Chromosome5 (Build37)
Map Location 138,779,837 - 138,780,072
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101B13.T7 (MSMg01no101_b13.b1)MSMg01-101B13.TJ (MSMg01no101_b13.g1)
ACCAG316599AG316600
length834786
length of high quality
(start - end)
69 (196 - 264)235 (66 - 300)
definitionCHROMAT_FILE: MSMg01no101_b13.b1 PHD_FILE: MSMg01no101_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:11 2005CHROMAT_FILE: MSMg01no101_b13.g1 PHD_FILE: MSMg01no101_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCGCGCCGGCCGGCGCTGGGCTTGCGTGCGCCCTCCCCGCCCTCTCCA
ATCAACTNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAG
AGGAGCCGCGGAATTCCAAACCCTTTCCCTTAGCTAGGGACGAACTAGGA
CTGTTTGGAACACTGGCAGATGGCTTTAGCTACGTCCGAATTCAATCTTA
AAAGGCACTTATGACCGGAAAATATTGAAAGAGAGCACGTGGGTCCATAC
ACTATACTAACGCAGGAATGGAACACGAGAATGAAAAATTACTGTATGGG
TAGGGAACGCTAGACTCCTTTAGGATAGCTTCCTTGAAACTCTTTTGCCT
CATGAGTGACTTTTACGCCACTCGGCTAGCCCTGTTTTTTCTTTTCTAGA
CCGGAGCATGTCCCACGACAGTTTTAACGTCCCGCCCCCCCCCCCTGTCA
TTGTTATGCGTATGCAAAGCAATGTCCGGATTGCGGTGGGGCGGCCCGGT
CGGTTGGCGGTGGTCGCGACGCACTGTGGTCTCGGGGGTGCGGGCGGACG
GTGAATCGCGCGCGGCCTGCGACGCGCGGGGCGCGCGCGGCGCCGCCGCG
GGCGTCGCCTCGCGTCGGGTCGCGGAGCCGGCCGGCCCGCCGGGCCGCCG
CGGCCGCGGGCGGCGGGGTGCGGCGTGACGACGCGTGGGGCGTGTGCGCG
GCGTGCGGGCCGCCCCGGGGCGTGCGGGTCGGCCTGCCCGCGAGGCCGAC
CGCGCGCCGACGCGCGACCGACTACACGGGGGGGACCGCCGGGCTGGTTC
GGACCGCGGCGACGGGGGGCGGCACGTGGGGGAG
GATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCTGGAATTCCTCTTAATTCTCTGTAACTCAATTTATTACT
CCTAGTCTATTCTGTACCAATAACAACAAGAAAAATAACTAATATTGCCT
GCCAAGAAGCTGTGTGTGGCTAAAGGATTAAGTCTGTTAGTATAGTTGGG
ACACTCAGCTGGTTGTGGCGTGTACCCTCAGTGAAGGTTAGTGGCCATGG
TATGACACCTTCCTTGAAGCTTCTCTCTCCAGGACACTGGGGTACAGAGT
GCGTTGGGGTGCGTGTGTTTGTTTGTGTGTGTGCCATATCCTTAACCTCT
ATCCTTTTTGTTTTTTCCCCCCCCCCTCTCGTCTCCTTCTTTTTCTTACT
CCCCTTTTCTTCCCTCTCTATCCTCATTCTTTTCTCCCCCTTACTGTTTA
TCTCTTTCTCTATTCTATCTCCATCTTTTAACCCCATCATTCTTACTCCT
CTCCTTCATCTCTTTTTCCCCGTTTCTTTCTCCCCTCCCCTTTTCCCCCT
CCTTCTTCACTTTACTACCACCTTCTTCCTTCTTCTTTCCCTCTTACTCT
TCTTTCTCTCCTCTCTACTTTCTTTCTTCCCTTCTCTTTGCATTTCTCTT
TCTCTCACTTCTCCTTCCTTTCTCCTCTCTCCCCTCTTTTCTGCTGCTCT
CTTTCTCTTTTCTCCCTTCCCTCCCCTTATTTTCCCTATATTCGTCTTCT
CTCTACTTCCTTCCCCCCCTTCCATTGTTTTCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_b13.g1 MSMg01no101_b13.g1 CHROMAT_FILE:
MSMg01no101_b13.g1 PHD_FILE: MSMg01no101_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:11 2005
         (235 letters)



>mm_chr5_138779637_138780272
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctcttaattctctgtaac-tcaatttattactcctagtctattctgtaccaataac 59
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 436 attcctcttaattctctgtaacatcaatttattactcctagtcttttctgtaccaataac 377

                                                                       
Query: 60  aacaagaaaaataactaatattgcctgccaagaagctgtgtgtggctaaaggattaagtc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aacaagaaaaataactaatattgcctgccaagaagctgtgtgtggctaaaggattaagtc 317

                                                                       
Query: 120 tgttagtatagttgggacactcagctggttgtggcgtgtaccctcagtgaaggttagtgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgttagtatagttgggacactcagctggttgtggcgtgtaccctcagtgaaggttagtgg 257

                                                                   
Query: 180 ccatggtatgacaccttccttgaagcttctctctccaggacactggggtacagagt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccatggtatgacaccttccttgaagcttctctctccaggacactggggtacagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space:   141702
Effective search space used:   141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)