Query= MSMg01no101_f06.b1 MSMg01no101_f06.b1 CHROMAT_FILE:
MSMg01no101_f06.b1 PHD_FILE: MSMg01no101_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:29 2005
(493 letters)
>mm_chr5_106528562_106529454
Length = 893
Score = 835 bits (432), Expect = 0.0
Identities = 474/494 (95%), Gaps = 15/494 (3%)
Strand = Plus / Plus
Query: 4 gaattcttcctat--ttcctg-acttgctttcgagtgactttggccttttagcataaacc 60
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttcctatgata--tgcacttgctttcgagtgactttggccttttagcataaacc 260
Query: 61 actccttgctttcctcccaggtttgcgctctgagtattctttggaaacatcagccagaag 120
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 261 actccttgctttcctcccaggtttgcgctctgagcattctttggaagcatcagccagaag 320
Query: 121 caatcttggtgtaagcagcgtgctgcactgcggcgcacagggtggatttgagcagggttg 180
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 caatcttggtgtaagcagtgtgctgcactgcggctcacagggtggatttgagcagggttg 380
Query: 181 gctcagatgtcataatgacacaaggccaataaagtggcatgagtgggctgatgatcctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcagatgtcataatgacacaaggccaataaagtggcatgagtgggctgatgatcctga 440
Query: 241 gcagagtgcttccctctcttgtgttctcattcaaaggatttgcagttaagctatgaactt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagagtgcttccctctcttgtgttctcattcaaaggatttgcagttaagctatg----- 495
Query: 301 cagtcctgggaccctgagcattacatga-ccatcttcccttccctgggcctcactcattc 359
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 496 ---tcctgggaccctgagcattacat-agccatcttcccttccctgggcctcactcattc 551
Query: 360 ctgcaccgctgggtgctggctacatgcattctcagagctacattcacttctgcaaactct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgcaccgctgggtgctggctacatgcattctcagagctacattcacttctgcaaactct 611
Query: 420 taaaaaagattttgttcagttcgtaggaaagatctacatgcatgggaaggtaaggatgat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 taaaaaagattttgttcagttcgtaggaaagatctacatgcatgggaaggtaaggatgat 671
Query: 480 agcccaaaaggtga 493
||||||||||||||
Sbjct: 672 agcccaaaaggtga 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_f06.g1 MSMg01no101_f06.g1 CHROMAT_FILE:
MSMg01no101_f06.g1 PHD_FILE: MSMg01no101_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:30 2005
(293 letters)
>mm_chr5_106674093_106674784
Length = 692
Score = 520 bits (269), Expect = e-152
Identities = 287/295 (97%), Gaps = 5/295 (1%)
Strand = Plus / Minus
Query: 1 ttcctttcttacttacagcctcttgctgattctttttctcttccttctctgaattgcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttcctttcttacttacagcctcttgctgattctttttctcttccttctctgaattgcaac 433
Query: 61 aaatgtgttgaagttgttcacacactggggggagatacacagaatgtctgcaatgagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaatgtgttgaagttgttcacacactggggggagatacacagaatgtctgcaatgagagc 373
Query: 121 ctccatagaagtaagagctctcaggacacagcaggagaagggttactctacactgtggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctccatagaagtaagagctctcaggacacagcaggagaagggttactctacactgtggct 313
Query: 181 ggtcagtggatgagccaaccctgaaacactgtatatatatactctaatgtatcaagcgtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 312 ggtcagtggatgagccaaccctgaaacactgtatatatatactctaatgtatcaagtgtt 253
Query: 241 ctgatatttattta--atgagtagtgcagcgttgaatgtattaataatcgcatta 293
|||||||||| | |||||||||| || |||||||||||||||||||||||||
Sbjct: 252 ctgatattta---agaatgagtagtgtagtgttgaatgtattaataatcgcatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space: 193972
Effective search space used: 193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
