GGGGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATATGATTTCCAGTGACTGAGGTCCCACTGGACAGCC
CTTGATACAGATAGAGTCTATTAGCAGGACAATTTCAGTAATGGCGAAAG
TCAGATCAGCATACTGGAAGTACCTTTCAGAGTGACATTGTCACACATCT
GGTCAAACAAATTAATATTCCCATCTGGAACAGTGCTTTTGGCAGGAACA
GTTAGTACTAAAAATCACATGACTCCTGAGTTTATAAAACAAAACAACAA
AAAATGTGTTAGTGTTTGCCATCAGTCCAAGAAAATGAAGCCTTTTATCT
TTCTGGATCCTCAGTCATTTTTAACTTCCACTAGGCTACCTCTTATGTTT
CCCTTGGCCATGTATGTCCTTTGTTATAGCAAGTTTCGTTGGAAAGCATC
AGGATACACTAGACCAATAATTACTTTTACATAAACTTTGCCTTGATATT
AAAAGGACCAATACATATGAATAAAACACTTGTGAAAACTACTACTGAGA
CCAATTAGGGACTGGGGAAGGTCCCCATCCAGTTCCCAGTAGTTATTTCC
TACAGAGAATGCATTCTTCCTGGTAGTCTTCTTTCTGGGTATGTGTAGGC
TTCTCACCTGAAAGATTATATTATCTTTGCCTTATCAGAAGGACTTGCTG
CT

TTTTTTTTCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAGACTTTTAGAT
GAAAAGGATAGTATTTTGTTGAAGACTGTCTCAGCACATAATGAGGTAAT
CATGTGACATTTTTTCTTGAGTTTGTTTATATAATGTATTACACTGAATG
ATTTTCATATATTGAACCAACCCTGCATCCCTTACATGAAGCCTACTTGA
TTGTGTTAAATGATGCTTTTCATTTGTTCTTGGATACAGTTTGCAAGAAT
TTTATTGAATATTTTTACATCATTATTCAGAAGTGAATTTGACCTGAAGT
TCTCTTTCTTTTGGGGGTCTTTGTGTGGTTTAACTATCAGAGTAACTGTG
GATTCAAAGAACTAATTAGGAAACATTCCTTCTGTTTCTATTTTGTGAAA
TAATTTGAGGAATATTGATATTAGCTCTTCTTTGAAGGTCTGGTAGAATC
CTGAACTAAAACCATCTAGCCCTGGACTTTGATTGCAAGACTTTTAATGA
CTATTTCTATTTGCTTATGGTTAATAGGACTGTTTAGATAGTATACCTGA
TCTTGATTTAAATTTGTTGCGTGGAATCTGTCTAAAAAATCATCCATTTC
CTCTATAATTTTCCAGTCATGTAAAGTATAT

Query= MSMg01no101_h04.b1 MSMg01no101_h04.b1 CHROMAT_FILE:
MSMg01no101_h04.b1 PHD_FILE: MSMg01no101_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:39 2005
         (650 letters)



>mm_chr5_40493196_40494245
          Length = 1050

 Score = 1226 bits (634), Expect = 0.0
 Identities = 643/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatatgatttccagtgactgaggtcccactggacagcccttgatacagatagag 64
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctatatgatttacagtgactgaggtcccactggacagccattgatacagatagag 264

                                                                       
Query: 65  tctattagcaggacaatttcagtaatggcgaaagtcagatcagcatactggaagtacctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctattagcaggacaatttcagtaatggcgaaagtcagatcagcatactggaagtacctt 324

                                                                       
Query: 125 tcagagtgacattgtcacacatctggtcaaacaaattaatattcccatctggaacagtgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagagtgacattgtcacacatctggtcaaacaaattaatattcccatctggaacagtgc 384

                                                                       
Query: 185 ttttggcaggaacagttagtactaaaaatcacatgactcctgagtttataaaacaaaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttggcaggaacagttagtactaaaaatcacatgactcctgagtttataaaacaaaaca 444

                                                                       
Query: 245 acaaaaaatgtgttagtgtttgccatcagtccaagaaaatgaagccttttatctttctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaaaaatgtgttagtgtttgccatcagtccaagaaaatgaagccttttatctttctgg 504

                                                                       
Query: 305 atcctcagtcatttttaacttccactaggctacctcttatgtttcccttggccatgtatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcctcagtcatttttaacttccactaggctacctcttatgtttcccttggccatgtatg 564

                                                                       
Query: 365 tcctttgttatagcaagtttcgttggaaagcatcaggatacactagaccaataattactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctttgttatagcaagtttcgttggaaagcatcaggatacactagaccaataattactt 624

                                                                       
Query: 425 ttacataaactttgccttgatattaaaaggaccaatacatatgaataaaacacttgtgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacataaactttgccttgatattaaaaggaccaatacatatgaataaaacacttgtgaa 684

                                                                       
Query: 485 aactactactgagaccaattagggactggggaaggtccccatccagttcccagtagttat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aactactactgagaccaattagggactggggaaggtccccatccagttcccagtagttat 744

                                                                       
Query: 545 ttcctacagagaatgcattcttcctggtagtcttctttctgggtatgtgtaggcttctca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcctacagagaatgcattcttcctggtagtcttctttctgggtatgtgtaggcttctca 804

                                                         
Query: 605 cctgaaagattatattatctttgccttatcagaaggacttgctgct 650
           ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 805 cctgaaagattatattatctttgccttattagaaggacttgctgct 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)