CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGGTATCTCGGCAGCTGGAACATATAATTTTGTAAATATGGAT
TTCTAGGCAGTGTGAAATATGGACTTTTTAAGAGAAGAAATAGAAGCCTG
AGCACTGAGTAAAAATGAATTTCTATCCCAAATATTGTCAATAGGAAGAG
AAGCAAAAGGTTAGCTTTTAGAGATGTTTTTAAAGGCAGAAGCAATTTGA
ATGGCTAGAAGTTCACTGTGGTAAGAATGATGGTTTTGTTGTTGTTGTTA
TGCAGGGGGTATTGAGTGTCTATATGTGTTAATGGAGAAGGTACAGGTGA
TGGTAATGATTCACTGTTGCATACACTAATATTGTGGAAGAGATCTTTTT
CTTTATTCTTTGGATTGAAAATAAACTAAGACTCTTGAGTTTGTATAATG
TGTCCTGAACCTGATACAGCCTTCTCCTGAGAGGCTCTGCCAGAGCACTG
CCAGAGCATGACAAATACAGATGTGGATGCCTGTAGCCAACCGTCAGATT
GAGCAAGGGGATCTGAATGGTGGAGTTAAAGAATGGACTGAAGGCGCTGT
AGGGTTTGCAACCATAAGAATAAAAATATCAACCAGCCAGACTCCCCAGA
GCTCCCAAGATCTAAACCACCAACCATAAAGGGAACATGGAGGGACCCGT
GGCTCCCACTTCATATGTAGTAGAAAA

ACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTGAAATTTGAATTCCTGGTATTC
CTTTCATTCTTGAGCTGACCAACATTCTTTACCTCAAGGATGAGTGTAAG
CAAGTGAATGATTCTAGTCTCTACTCCTATTTCATGTTCCCTGATATGAC
TACAGTTCTGACATATTTCTTTTGTCATTGTATGCTTCATGAGGCCATTT
TTTTTAGGCCTGTCTTCTGTTTTGTACATTTTACAATTGTGTTTGTGTTT
CTGAGATAAACAGAATTACATATATATGAGTGTGTGTGCATGTGTGTTTA
TAGTATGTGCCTTGTTAACAATATGTAACTAAGATGTTTATCAAGGATAT
TCATTTTACAGGTTTCAGTATATGGCTACTTGGCTCCTGTATTTTATGAA
AAGTCATGGCATCTAAAGTATGTAGTAAAGTTTCCTTATCATATATCTGA
TGACAAATGACGATATATTAATCTTAATATGTTACCTTCAAAAATATTCC
CTTGCGGCTTGGTGACATGGTTCATTGGTTAATAGCACCCTATTCGCTCT
TCTGAAAGCTTGGAGTTTTAATTCCAGCATCCCCATGGTGGATTCCCAAT
CTTCCCTTATGCATACCTGATCCCCCCTTTTTGTATTGTTTGAACCCCCC
TTTCATTGTTCTTTCCCCTTTATATTACAT

Query= MSMg01no101_h08.b1 MSMg01no101_h08.b1 CHROMAT_FILE:
MSMg01no101_h08.b1 PHD_FILE: MSMg01no101_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:40 2005
         (571 letters)



>mm_chr5_60835829_60836799
          Length = 971

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggtatctcggcagctggaacatataattttgtaaatatggatttctaggca 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaattccatggtaacagggcagctggaacatataattttgtaaatatggatttctaggca 552

                                                                       
Query: 65  gtgtgaaatatggactttttaagagaagaaatagaagcctgagcactgagtaaaaatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgtgaaatatggactttttaagagaagaaatagaagcctgagcactgagtaaaaatgaa 492

                                                                       
Query: 125 tttctatcccaaatattgtcaataggaagagaagcaaaaggttagcttttagagatgttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttctatcccaaatattgtcaataggaagagaagcaaaaggttagcttttagagatgttt 432

                                                                       
Query: 185 ttaaaggcagaagcaatttgaatggctagaagttcactgtggtaagaatgatggttttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttaaaggcagaagcaatttgaatggctagaagttcactgtggtaagaatgatggttttgt 372

                                                                       
Query: 245 tgttgttgttatgcagggggtattgagtgtctatatgtgttaatggagaaggtacaggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgttgttgttatgcagggggtattgagtgtctatatgtgttaatggagaaggtacaggtg 312

                                                                       
Query: 305 atggtaatgattcactgttgcatacactaatattgtggaagagatctttttctttattct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atggtaatgattcactgttgcatacactaatattgtggaagagatctttttctttattct 252

                                                                       
Query: 365 ttggattgaaaataaactaagactcttgagtttgtataatgtgtcctgaacctgatacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttggattgaaaataaactaagactcttgagtttgtataatgtgtcctgaacctgatacag 192

                                                                       
Query: 425 ccttctcctgagaggctctgccagagcactgccagagcatgacaaatacagatgtggatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccttctcctgagaggctctgccagagcactgccagagcatgacaaatacagatgtggatg 132

                                                                       
Query: 485 cctgtagccaaccgtcagattgagcaaggggatctgaatggtggagttaaagaatggact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cctgtagccaaccgtcagattgagcaaggggatctgaatggtggagttaaagaatggact 72

                                      
Query: 545 gaaggcgctgtagggtttgcaaccata 571
           |||||||||||||||||||||||||||
Sbjct: 71  gaaggcgctgtagggtttgcaaccata 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no101_h08.g1 MSMg01no101_h08.g1 CHROMAT_FILE:
MSMg01no101_h08.g1 PHD_FILE: MSMg01no101_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:40 2005
         (248 letters)



>mm_chr5_60766817_60767464
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgaaatttgaattcctggtattcctttcattcttgagctgaccaacattctttacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgaaatttgaattcctggtattcctttcattcttgagctgaccaacattctttacct 260

                                                                       
Query: 61  caaggatgagtgtaagcaagtgaatgattctagtctctactcctatttcatgttccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggatgagtgtaagcaagtgaatgattctagtctctactcctatttcatgttccctga 320

                                                                       
Query: 121 tatgactacagttctgacatatttcttttgtcattgtatgcttcatgaggccattttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgactacagttctgacatatttcttttgtcattgtatgcttcatgaggccattttttt 380

                                                                       
Query: 181 taggcctgtcttctgttttgtacattttacaattgtgtttgtgtttctgagataaacaga 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggcctgtattctgttttgtacattttacaattgtgtttgtgtttctgagataaacaga 440

                   
Query: 241 attacata 248
           ||||||||
Sbjct: 441 attacata 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)