Query= MSMg01no101_j24.b1 MSMg01no101_j24.b1 CHROMAT_FILE:
MSMg01no101_j24.b1 PHD_FILE: MSMg01no101_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:54 2005
(665 letters)
>mm_chr5_84926013_84927077
Length = 1065
Score = 1064 bits (550), Expect = 0.0
Identities = 656/738 (88%), Gaps = 73/738 (9%)
Strand = Plus / Plus
Query: 1 aataaatagttttgtaaatcacaacaaagattaatcttagatatactaacaaacctcaac 60
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aataaatagttttgtgaatcacaacaaagattaatcttagatatactaataaacctcaac 260
Query: 61 atgtaaataaatgaaagaaaaattcattgataatgaaactagtcaaattattgtttttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaaataaatgaaagaaaaattcattgataatgaaactagtcaaattattgtttttga 320
Query: 121 aaatgatttttcacacaatcttgataatatttcccatttccccaactcttcccatataat 180
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgatttttgacacaatattgataatatttcccatttccccaactcttcccatataat 380
Query: 181 tttcagctatctaccaaccctatttcacattttctctttcttctccctctattcacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcagctatctaccaaccctatttcacattttctctttcttctccctctattcacattt 440
Query: 241 gtgtctctgtatttcaaagaaagggaaagaaagagagagagagagagagagagagagaga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtctctgtatctcaaagaaagggaaagaaagagagagagagagagagagagagagaga 500
Query: 301 cagagagagagaga---------------------------------gagagagagaaag 327
||||||||||||| |||||||||||||
Sbjct: 501 gagagagagagagaaagaagaaagaaagaaagaaagaaagagagagagagagagagaaag 560
Query: 328 gaag---gaa-------------------------------------gaaagaaagaaag 347
||| ||| |||||||||||||
Sbjct: 561 aaagaaagaaagaaagaaagaaagagagagagagagagagagagaaagaaagaaagaaag 620
Query: 348 aaagaaagaaagaaaggtagaaagaaagcagacaaaatatattaataaaaagctcaaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagaaagaaagaaaggtagaaagaaagcagacaaaatatattaataaaaagctcaaaaa 680
Query: 408 caacaaagcaaaacatgaggtcaattttgtgttggctcacttcttacttctgggcctggg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caacaaagcaaaacatgaggtcaattttgtgttggctcacttcttacttctgggcctggg 740
Query: 468 gcctgccttggagtgtggttggtatatccagttgcacaccatcggagaaaaccaactttg 527
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccttccttggagtgtggttggtatatccagttgcacaccatcggagaaaaccaactttg 800
Query: 528 cctttccaagtaggtttccactctaactccctgaggtggccctgatgatttcagtcgagg 587
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 cctttccaagtaggtttccactctaactccctgaggtggtcctgatgatttcagtcgagg 860
Query: 588 aaacagtactatccagacatagcaggactgatacaaatatgacatcaaatgatatggctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaacagtactatccagacatagcaggactgatacaaatatgacatcaaatgatatggctt 920
Query: 648 tgcttctgagctttttct 665
||||||||||||||||||
Sbjct: 921 tgcttctgagctttttct 938
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_j24.g1 MSMg01no101_j24.g1 CHROMAT_FILE:
MSMg01no101_j24.g1 PHD_FILE: MSMg01no101_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:54 2005
(204 letters)
>mm_chr5_85069301_85069903
Length = 603
Score = 387 bits (200), Expect = e-112
Identities = 203/204 (99%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 1 cttttctttgttctccaggaagttaagcatgggtattaccagagcgttcagtattgtgag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 403 cttttctttgttctccaggaagttaagcatgggtattaccagag-gttcagtattgtgag 345
Query: 61 tttgaacacacaaaagattgtcagttcaaaggactttcaactaatgacagagtgattcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tttgaacacacaaaagattgtcagttcaaaggactttcaactaatgacagagtgattcct 285
Query: 121 ctgtctgtaatctgaactgctattacattagaaaggccttcagaaccagcagacatgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgtctgtaatctgaactgctattacattagaaaggccttcagaaccagcagacatgtta 225
Query: 181 ttttaaagtaatgggcactcggga 204
||||||||||||||||||||||||
Sbjct: 224 ttttaaagtaatgggcactcggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 603
Length adjustment: 8
Effective length of query: 196
Effective length of database: 595
Effective search space: 116620
Effective search space used: 116620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
