BAC Information

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BAC

Clone NameMSMg01-102A22
Chromosome5 (Build37)
Map Location 24,534,313 - 24,534,600
singlet/doubletsinglet
Overlap genePrkag2
Upstream geneDrctnnb1a, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A22.T7 (MSMg01no102_a22.b1)MSMg01-102A22.TJ (MSMg01no102_a22.g1)
ACCAG317307AG317308
length742708
length of high quality
(start - end)
119 (144 - 262)288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no102_a22.b1 PHD_FILE: MSMg01no102_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:31 2005CHROMAT_FILE: MSMg01no102_a22.g1 PHD_FILE: MSMg01no102_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAATTCAGT
GGGTGATTACAGACAATAGATTTGCGAGGAGGACAGGGACTTTTACAAAG
AATAAGGGTTTCCTTCACCAGGGGAGGATGAGAGCGGCTGATGGGAGTGA
GAATAACTAAAATTCAGTGTAATACACGAAACTGTCAAAGGTGTGCATGT
GTGTGTGTGTGCACACACAGGTGTGTGCCTGTATGTGTGCATATGTGCAA
GTATGTTGGGCGTGGGTGTGGGTGAGTGTAGTGAAACTTTCCCTAACCTA
TGATTATAAAATGCCTTGTTATTATACTTTATGGATTTTTTTTATTAATT
GATTTGTGTGTGTTTCTTCCCGCCTGTCGCGTGTACCCTGGCTGTCCTGC
AACTTCACTTCGTATACTACGCTCGAACTATAATTCTCTATATCTGCCTG
CCTCTGTCTCCTTGCTCCCTTTTTTTTCCTTTTCTTTATATTACCTTATC
TCTTTCCAATGCTCCTTTGCTTAATCCCCCTCTCCCTGTTCCAGCCTTTC
GTCCCTTTATTCCTTTCTTCTCTCTTTATCCCTCTCCAATACTTATGCTT
TTCATTCATTAACCACACCTTATTTCTACTTCCGTTTTTTCGATTTTTTC
CCTCTCCCCCCTTCTCCTCTTCTATCTTCCCTTTTCTCTCGTGCTCCATC
TCCCCTTTCCCTCCCCTTTTTGTCTTTACCTTCCCCATCCCT
TGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCACATCTCCATCCAGGAGCGGCATGGCAAAGG
AACTCAGGTCCTGGGGGGCAAGAGAGCACACAGTCAAAGCCATGGCCCAC
GGGGCACGTGTGCATGCTCTGGGAGGGACCCACCTCCCTCTCTGACAGGC
CTCCTAGGGTCCACACACTTGTAAGGATACTGGGAGGAATGAAGTGGTCT
ACAGAGACGCTGTGTCCCTCCCTCTGGCTACCAGACTATGGAAACAGTGG
AACTGAGACTTGAACCTCTGTTCCTGTATTGAAATCTTGAGTCTCCTGCC
AAGGCTCAGAAGACGGCCTTAGAGGGTAAGGGGACCACTGAGCCCCCTTG
TTCCTCTTTGTAACATGTCACACTGAACGAAGACTTTCCTGCTTTCCACT
ATGGCTTGTCTATTCAGCTGGTATACGAAGTGCGAGCCTAGGTAAGGATG
CCAGGCCCAGCCACCAGCCCTAACAACTCCCGTAACATGGGGATGCTCAC
CTATATCTCCATTCCCTTTCAAAACATCAAGCCAAATGTCCAACAGCAGC
CCCTCCCACCCCCTGTAAGGAAGAACTTAGGCCAAGCCACATCCCAAGGG
AATGGACAGATCCGGGGCCAAGGTAGGCTGGCTGAACGCCCCGGTTCTTG
GGATGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a22.g1 MSMg01no102_a22.g1 CHROMAT_FILE:
MSMg01no102_a22.g1 PHD_FILE: MSMg01no102_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:31 2005
         (288 letters)



>mm_chr5_24534113_24534800
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatctccatccaggagcggcatggcaaaggaactcaggtcctggggggcaagagagca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cacatctccatccaggagcggcatggcaaaggaactcaggtcctggggggtaagagagca 260

                                                                       
Query: 61  cacagtcaaagccatggcccacggggcacgtgtgcatgctctgggagggacccacctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtcaaagccatggcccacggggcacgtgtgcatgctctgggagggacccacctccc 320

                                                                       
Query: 121 tctctgacaggcctcctagggtccacacacttgtaaggatactgggaggaatgaagtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgacaggcctcctagggtccacacacttgtaaggatactgggaggaatgaagtggt 380

                                                                       
Query: 181 ctacagagacgctgtgtccctccctctggctaccagactatggaaacagtggaactgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacagagacgctgtgtccctccctctggctaccagactatggaaacagtggaactgaga 440

                                                           
Query: 241 cttgaacctctgttcctgtattgaaatcttgagtctcctgccaaggct 288
           ||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgaacctctggccctgtattgaaatcttgagtctcctgccaaggct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)