BAC Information

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BAC

Clone NameMSMg01-102C16
Chromosome5 (Build37)
Map Location 8,005,406 - 8,005,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4
Downstream geneSri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102C16.T7 (MSMg01no102_c16.b1)MSMg01-102C16.TJ (MSMg01no102_c16.g1)
ACCAG317388AG317389
length695692
length of high quality
(start - end)
461 (68 - 528)245 (66 - 310)
definitionCHROMAT_FILE: MSMg01no102_c16.b1 PHD_FILE: MSMg01no102_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:40 2005CHROMAT_FILE: MSMg01no102_c16.g1 PHD_FILE: MSMg01no102_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGCGCGGAATT
CATCATCTGTTCCAGAGCTACCAAGAGCTGGCTTCCTGAGCTCATCCAGC
GATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTT
CTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTAATTTTTTTAATTA
AGAAATGTCACCAATGTCCTCCCCCTCTATATTGGGAACTGTTTGATAGT
AAACCCAATTGGCAGTGATATTTGTAGTGCTACTCTCTGCCACTTTAAAA
ATCAGGAAGGATATTAGCATCAAAATAAATCACAACAAAACCCAGAGGGG
TAATGAGGAATGGGAGCCAGGAAAACAAGGGATTATTGAACCTACCTAAA
TTTGCTCAGTGGATTGAAATTTTAGGAGCAAGTCTGTATAATTTTTCTGG
AGGTATTACTATTGTCTCAAACATCATTTGATTCATTTACATAGACATAA
CATTTTTTTCTCAATATTATGCAAGCCCTCCTGAGCTTAGTAGTCCTTAG
GCCCCAGCAAGGGAGCTCATCTATCATTGGAGGGATCCAAGGCTGTCCTC
CGTGGATGCTAATGCCTGCTTGTCTTGAAAGTCTTCAATCACGTGTTATA
TCCTGACATTGACAGTTTCCACGCGATAGCCGATCTTCGCTATAC
TGAAGTGAGTAGGCTGGCGGCGCCTGCTTCTAAATTTAGGTGAACTATAG
AATTTTCCAGAAATTCTGTAGGCTTCTTGTATGTTCATGGGCATCTCTTT
CTTTAGGTTTGGCACCCTTTCTTCTATAATTTTGTTAAAGATATTTGCTG
GCCCTTTGAGTTGAAAATCTTCATTCTCATCTACTCCTATTATCTGTAGG
TTTTGTCTTCTTTTTGTGTCCTGGATTTTCTGGATGTTTTGAGTTAAGAT
CTTTTTGCATTTTCCATTTTCTTTGATTGTTGTGCCGATGTTCTCTATGG
AATCTTCTGCACTTGATATTCTCTCTTTCATCTCTTGTATTGTGTTGCTG
ATGCTCGCATCTATGCCTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAG
CGTTGCCTCACTTTGGCTTTTCTTCATTGTGTCTACTTCCCTTTTTAGGT
CTTGCATGGTTTTATTCACTTCCATCACCTGTTTTGGTTGTGTTTTCCTG
CAATTCTTTAAGGGCTATTTTTCGTTCCTCTTTAATGTCTTCTACCTGTT
TATCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTACTATACGCTTTTTTG
TTCTCTCCTACCATCATCATTAAATTACCTTTTAAAATAGGGCCTATCTT
TCTCCTGTGTGTTTGCTTTCCCCTGTCCTGCTCCATCCGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_c16.b1 MSMg01no102_c16.b1 CHROMAT_FILE:
MSMg01no102_c16.b1 PHD_FILE: MSMg01no102_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:40 2005
         (461 letters)



>mm_chr5_8005084_8005944
          Length = 861

 Score =  586 bits (303), Expect = e-171
 Identities = 330/339 (97%)
 Strand = Plus / Plus

                                                                       
Query: 123 ttttttaattaagaaatgtcaccaatgtcctccccctctatattgggaactgtttgatag 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 ttttttaattaagaaatgtcaccaatgtcctccccctctatattgggaactgtttggtag 382

                                                                       
Query: 183 taaacccaattggcagtgatatttgtagtgctactctctgccactttaaaaatcaggaag 242
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 383 taaacccaattggcagcgatatttgtagtgctactctctgccactttacaaatcaggaag 442

                                                                       
Query: 243 gatattagcatcaaaataaatcacaacaaaacccagaggggtaatgaggaatgggagcca 302
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggtattagcatcaaaataaatcacaacaaaacccagaggggtaatgaggaatgggagcca 502

                                                                       
Query: 303 ggaaaacaagggattattgaacctacctaaatttgctcagtggattgaaattttaggagc 362
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 503 ggaaaacaagggattattgaacctacctaaatttgctcagtgcattgaaatttcaggagc 562

                                                                       
Query: 363 aagtctgtataatttttctggaggtattactattgtctcaaacatcatttgattcattta 422
           ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagtctgtacagtttttctgggggtattactattgtctcaaacatcatttgattcattta 622

                                                  
Query: 423 catagacataacatttttttctcaatattatgcaagccc 461
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 catagacataacatttttttctcaatattatgcaagccc 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)