Query= MSMg01no102_m04.b1 MSMg01no102_m04.b1 CHROMAT_FILE:
MSMg01no102_m04.b1 PHD_FILE: MSMg01no102_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:27 2005
(349 letters)
>mm_chr5_31279134_31279882
Length = 749
Score = 615 bits (318), Expect = e-180
Identities = 341/350 (97%), Gaps = 4/350 (1%)
Strand = Plus / Minus
Query: 1 ttagtcagggaatacctgtctcaac-acaacaaaaaagagagctggtgacctggcacagg 59
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 732 ttagtcagggaatacctgtctcaacaacaacaaaaaagagagctggtgagctggcacagg 673
Query: 60 gggtaaaggctcttgccaccaagctcacctgagttcaatctctgaagccaatctggtgga 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 672 gggtaaaggctcttgccaccaagctcacctgagttcaatctctggagccaatctggtgga 613
Query: 120 aggagaattaactctcacaagttgacctctgacctccaggtgtgtgccatggcatgcata 179
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ---agaactaactctcacaagttgacctctgacctccaggtgtgtgccatggcatgcata 556
Query: 180 aacacaaatgtaaaaaacataaataaaggaagaaaaagaaacagatgagaggaaagagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aacacaaatgtaaaaaacataaataaaggaagaaaaagaaacagatgagaggaaagagag 496
Query: 240 aatggggtctgtggcattttgaattcttatattatgaaaatagttttgaccatttagatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatggggtctgtggcattttgaattcttatattatgaaaatagttttgaccatttagatt 436
Query: 300 gcccaggattcccagaaacacttggcatagccgtgatgtttttgaattat 349
||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 435 gcccaggattcccagaaacacttggcaaagccgtaatgtttttgaattat 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_m04.g1 MSMg01no102_m04.g1 CHROMAT_FILE:
MSMg01no102_m04.g1 PHD_FILE: MSMg01no102_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:27 2005
(328 letters)
>mm_chr5_31121466_31122195
Length = 730
Score = 607 bits (314), Expect = e-178
Identities = 326/330 (98%), Gaps = 2/330 (0%)
Strand = Plus / Plus
Query: 1 tcctagacca-gcccatgtcc-tacacaggcctctaaaggctagctctgtggtggggagt 58
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctagaccaagcccatgtccatacacaggcctctaaaggctagctctgtggtggggagt 260
Query: 59 ggtccctagggagcgtgtgtgtcttcaggctccatccccaggactgtaactgaacttgga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtccctagggagcgtgtgtgtcttcaggctccatccccaggactgtaactgaacttgga 320
Query: 119 aaggatctacctctgggaagacggatgtgggtgtggggaaaggaaaggagactcaacagg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggatctacctctgggaagacggatgtgggtgtggggaaaggaaaggagactcaacagg 380
Query: 179 gaacttttagttcctctgctttcttgtttgacgtgttttaagatgcactgctctggactt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacttttagttcctctgctttcttgtttgacgtgttttaagatgcactgctctggactt 440
Query: 239 aggggagagctcgtggacttgacagtgcacatgactccgccatcaacacatcttcataga 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggagagctcgtagacttgacagtgcacatgactccgccatcaacacatcttcataga 500
Query: 299 caacctttgctagagtggtcagtgatggag 328
|||||||||||||||||||||||||||||
Sbjct: 501 aaacctttgctagagtggtcagtgatggag 530
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 730
Length adjustment: 9
Effective length of query: 319
Effective length of database: 721
Effective search space: 229999
Effective search space used: 229999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
