Query= MSMg01no102_m17.b1 MSMg01no102_m17.b1 CHROMAT_FILE:
MSMg01no102_m17.b1 PHD_FILE: MSMg01no102_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:29 2005
(327 letters)
>mm_chr5_127894649_127895375
Length = 727
Score = 590 bits (305), Expect = e-173
Identities = 320/325 (98%)
Strand = Plus / Plus
Query: 3 gaattcttcccacgtctgccataaagtggggcattttctatctgcatcgtaaaatcgcag 62
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttcccacgtctgtcataaagtggggcattttctatctgcatcgtaaaatcgcaa 262
Query: 63 agaggaaaaccctcctgccatatctgaagatgatggtaacggagacatacattcagtgtc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaggaaaaccctcctgccatatctgaagatgatggtaacggagacatacattcagtgtc 322
Query: 123 agaaaagagtttctgaaagcttctctctcatcctagctcactagatctcagcatctttcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaaaagagtttctgaaagcttctctctcatcctagctcactagatctcagcatctttcc 382
Query: 183 tggtgtgtcccagtagctaaggcaccgaggaaggaactcctcatctacctgtaggttcct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggtgtgtcccagtagctaaggcaccgaggaaggaactcctcatctacctgtaggttcct 442
Query: 243 gaactggggcgaacgtgctacataatgcattttcagattttcgtgttatccttctaagcc 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 gaactggggcgaacgtgctacataatgcattttcagataaacgtgttatccttctaagcc 502
Query: 303 caagaaagacttcacatttgtgttt 327
|||||||||||||||||||||||||
Sbjct: 503 caagaaagacttcacatttgtgttt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_m17.g1 MSMg01no102_m17.g1 CHROMAT_FILE:
MSMg01no102_m17.g1 PHD_FILE: MSMg01no102_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:29 2005
(525 letters)
>mm_chr5_127979961_127980884
Length = 924
Score = 1000 bits (517), Expect = 0.0
Identities = 523/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 1 tcggctcctcctgcaccatgcctgtctggaagctgccatgttcccatcttgatgacaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tcggctcctcctgcaccatgcctgtctggaagctgccatgttcccatcttgatgacaatg 828
Query: 61 gactgagcctctgaatctgtaagccagccccaattttatgttgtccttataagagttgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gactgagcctctgaatctgtaagccagccccaattttatgttgtccttataagagttgcc 768
Query: 121 ttggccatggtgtctgttcacagaagtaaaaccctaactaagatgaacccacaatccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttggccatggtgtctgttcacagaagtaaaaccctaactaagatgaacccacaatccttt 708
Query: 181 catctctccagtcctgacaatagaactctcttccctcttatgttttcttactctctttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 catctctccagtcctgacaatagaactctcttccctcttatgttttcttactctctttct 648
Query: 241 ccatctggccgcctccaccattcaggcaccccaggtgtgcctctactcaggccttctgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ccatctggccgcctccaccattcaggcaccccaggtgtgcctctactcaggccttctgta 588
Query: 301 attattcccatccacatcacttatcatcaacctatcctgctgcccacagctcatccactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 587 attattcccatccacatcacttatcatcaacctatcctgctgcccacagctcacccactg 528
Query: 361 atgccattgaacccctgtggcttggaactcacacgacccagtgtacatttatctgcactt 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 at-ccattgaacccctgtggcttggaactcacacgacccagtgtacatttatctgcactt 469
Query: 421 gggtgttcaatatccacatctcccttcaccaattcatgctccctagtagcagggctatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gggtgttcaatatccacatctcccttcaccaattcatgctccctagtagcagggctatgg 409
Query: 481 aatccttctattaccttcaaatgacacattaccgtgctgacccac 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aatccttctattaccttcaaatgacacattaccgtgctgacccac 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
