BAC Information

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BAC

Clone NameMSMg01-102N23
Chromosome5 (Build37)
Map Location 122,441,225 - 122,441,475
singlet/doubletsinglet
Overlap geneCutl2
Upstream geneRph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik
Downstream geneLOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102N23.T7 (MSMg01no102_n23.b1)MSMg01-102N23.TJ (MSMg01no102_n23.g1)
ACCAG317901AG317902
length705788
length of high quality
(start - end)
253 (66 - 318)95 (130 - 224)
definitionCHROMAT_FILE: MSMg01no102_n23.b1 PHD_FILE: MSMg01no102_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:36 2005CHROMAT_FILE: MSMg01no102_n23.g1 PHD_FILE: MSMg01no102_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATTTGCGGCGCTATACGACTCCTATAGTTCGAGACCCGCGGAATTCG
AAATTGATTTCCCCGCTTCTACTGAACAACCAAAGCGGGCCCTCGGAGGT
TGATCATGATCTCGTGGATGTAGATGACTTAGGAGAAAGCTGAAGTTGTG
AAGGAGATGCACGCAGTCTTCCATCCATGGACAGCACTGCTCCACACCCC
GCCCCACCACCCCTGCCCCTGCCCCCTGCCCCCTACCCAGCTCTTCTCTT
ATTCTGTCTGTGCCAGCATAGAGGCCTCCTCTGCCCCACGACTGCACATG
GTGCCTCCTGCTCTGTCCCCTGATCCCTCTGTCCCTGGTACTAATCACCA
TGACACAAGTTCTTTATGCTTTGATGCCATTTCCTGTGAAACGTGAGCTC
TTGAACGGCGTAGAGACTGCCTCTGTTTGCTTCATGTACTGAAACCCACG
GAGTTCCCCATGAAGATTGATCAATGAACTGATGAATGACTGAATGCATG
TAGTACACACGCGACTCACTGACTTACATATTCACTCACGTCACAACCTC
CATTCCTCCTTACCCACCCTGCTACATATGCTGGTTGCTCTCATTCCCAC
CTTCCTTTGTCGTCCGCCAGTTTAATGGCGCCCCTTGACTCCTCCTTCTC
CCCTCTGCCTTGGCCTTTTCCTCCCTACCTCCTCCCCCGTCTGCTACATA
CATTC
NNNNNNNNNNNNNCCCCNCCCCCCCCCCCCCCCCCCCCCCNCGCCCACNC
CCCCGATGAAGTGCGTGGCCTGGCGGCGCCTGGTCCAAAACAGGAGGTGA
CCTATAGAATTTCCGCGAAATTCTGGGAACTCCCGACCCCGGCACGGTCC
CTTTAAGAGGGATTTTTCAGGCGCGCGTGTGGGGGCGTGGTAAATTCGGG
GGCGGGACCTTGCAGGGCTGACCAATGGGCAGGCGCGTGTGGCTCGGAGG
CGTTTCCCCCTCCTGGGCGGGCCGCTCAGGGTTAAAGGGGCGCCCGCCGG
TCGCCGCCACTCGGCCTCCGGGAGACAAAGGGCCCTATCGTCGCCGCCCC
CCGAGCTGTTCCGGGCCATGTTCAGGACAGACCGTCGCGCCGGTCCCAGA
GCCAGGTATAGTCGGGCGGTACGTGACCGCGACGGTGTTCGGAGCCGCGC
GGATGTCGCCCGGGATCCGTCCGCGGACTCCATCGCGGTCCGGACGGTGT
ACCACGGCAGGCTTGAGGTTCCGCGTTGTTGATGTCCTGCCTCCGAATCC
CACGAGTCCTAGACGCGTTTTCCAGTCGCGACCCCACTATAGGAGGGACT
CATCCCTTGCCTTAACTCTTTTAAGAATCTACTTACTGTTTACTTGTGCC
ATGCGTGTATGCTCCCTAACACAACTATGCTGTGGCACGCCCGTCCTTTC
CCTTCTTTCCAATTGGGTTACGAGCGGGAACAAACCTCGCTCGCACTTAA
TGCTTGATATTCCCGATGTCTTTTATCCTTTTAACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_n23.b1 MSMg01no102_n23.b1 CHROMAT_FILE:
MSMg01no102_n23.b1 PHD_FILE: MSMg01no102_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:36 2005
         (253 letters)



>mm_chr5_122441022_122441675
          Length = 654

 Score =  447 bits (231), Expect = e-130
 Identities = 246/251 (98%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctactgaacaaccaaagcgggccctcggaggttgatcatgatctcgtggatgtagatgac 63
           |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 454 ctaccgaacaaccaaagcgggccctcgggggttgatcatgatctcatggatgtagatgac 395

                                                                       
Query: 64  ttaggagaaagctgaagttgtgaaggagatgcacgcagtcttccatccatggacagcact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttaggagaaagctgaagttgtgaaggagatgcacgcagtcttccatccatggacagcact 335

                                                                       
Query: 124 gctccacaccccg-ccccaccacccctgcccctgccccctgccccctacccagctcttct 182
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gctccacaccccgcccccaccacccctgcccctgccccctgccccctacccagctcttct 275

                                                                       
Query: 183 cttattctgtctgtgccagcatagaggcctcctctgccccacgactgcacatggtgcctc 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 274 cttattctgtctgtgccagcatagaggcctcctctgccccacgactgcacatggtgtctc 215

                      
Query: 243 ctgctctgtcc 253
           |||||||||||
Sbjct: 214 ctgctctgtcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 654
Length adjustment: 9
Effective length of query: 244
Effective length of database: 645
Effective search space:   157380
Effective search space used:   157380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)