BAC Information

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BAC

Clone NameMSMg01-103A12
Chromosome5 (Build37)
Map Location 56,834,928 - 56,835,154
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103A12.T7 (MSMg01no103_a12.b1)MSMg01-103A12.TJ (MSMg01no103_a12.g1)
ACCAG318015AG318016
length711729
length of high quality
(start - end)
226 (90 - 315)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no103_a12.b1 PHD_FILE: MSMg01no103_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:48 2005CHROMAT_FILE: MSMg01no103_a12.g1 PHD_FILE: MSMg01no103_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTTTGCTCATTGGTGATCAATAATTACATGCACTTTTTATTTT
TCTTTACAATAATATTATTGAGATTTCCTAAGCAACTTTCCGGTCACCAT
AAAAGGCATATATATCATAGCGTATCTTCTAATTCACAGCAGACACCAAA
TCCTTATAATCTGCATTCTACAATCTTTAAGTTCTATATTCTATGATCTT
TCCCAATCTTTAAATATCTTCTATGATCTTTCTTAATCCTTAAATATAAA
GGTTGTGCTATATATGTATCACTTAGACATTATATTCGGTTAGCCATTTT
GCATAGTATCAATCCTACGTTCTCTTCTAGTTTATGTGATCTCTCACGGT
GTTTCAGGTTTAATGCAATGGACAAGATTTATCTCTAATTGCGTGGTCCT
TGCATTCTATTACATATCCTTTTCAGTGCTTCTACTAGGTACTTTCAACA
TTGTATTATTTTTCTCCTTTTGCCACTTTGCCTTATTCCCTCAAATACTT
TTTCTTGTGACAGCAATCCCCGAATAAATTTTATCTCCCCCCCATTATAT
CCCCTTGTCTTTCATATCTGCCTACTCCCTTAATTTTTTGTCACGTCCCT
TTTTTATGAATCCCTTATTTTCCTCTCCCCGCTCCACTGTTTCCCTATTC
CCTCTCTTAAC
TTCTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAAACACTCTGCAACAAGACC
TCTGTGTATGTTATGCCTCTTAGCTTGGCGATTTTATGAGACTCCTCACA
GTGAGCACAGATGGCTCTCTGACTCTTTTGCCTGCTATTGGAACTGTTTT
TCTATTTTGCGGTTGCCTTGTCCAGCCTGTATGTGAAGGCTTTCCCTCAT
TTCATTGTGTCTTCTTTTGTCCTGACTGGCTGTCATTTATTGGAGGCTTG
CTAATTTCTAAAGGATACTTATTTCACAGTGGATCTGGTTGAGAGAGAGT
TGAGGTTATTTCGTCCGCCTTTTATCCTTTCACACCATCCTCTTATTCAT
TTTTTTCTTTTCCCCCCCTTTTTCCCTTCTCACTATCTTCGCACCCTTCC
ATTATATTTCTTCCACCAATCTTTACCTCCTCCTTCCTTTCACCTCTCTT
TATTTTTTCATATTACCCCCCACTTTCCCTTTATTATTCCCACCCCTCCA
TCACTCTCCCCTCCACCCTCACATATCCTTTTCCTCCCCCCCCCTCCCCC
TTTACCATTCTCCCCTTCTCCACCTTTTTTTTCTCTCTCCCTCAACCCCC
CCCCTTTATGCCCCCCTTTCCTATCTCTTCTACCTTTTCCCCTCCATTAT
CCCCTCCCCCCCTCCCCTACACTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_a12.b1 MSMg01no103_a12.b1 CHROMAT_FILE:
MSMg01no103_a12.b1 PHD_FILE: MSMg01no103_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:48 2005
         (226 letters)



>mm_chr5_56834728_56835354
          Length = 627

 Score =  400 bits (207), Expect = e-116
 Identities = 222/227 (97%), Gaps = 1/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttatttttcttta-caataatattattgagatttcctaagcaactttccggtcacc 59
           |||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||
Sbjct: 427 ctttttatttttctttagaaataatattattgagattccctaagcaactttctggtcacc 368

                                                                       
Query: 60  ataaaaggcatatatatcatagcgtatcttctaattcacagcagacaccaaatccttata 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 367 ataaaaggcatatatatcatagtgtatcttctaattcacagcagacaccaaatccttata 308

                                                                       
Query: 120 atctgcattctacaatctttaagttctatattctatgatctttcccaatctttaaatatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atctgcattctacaatctttaagttctatattctatgatctttcccaatctttaaatatc 248

                                                          
Query: 180 ttctatgatctttcttaatccttaaatataaaggttgtgctatatat 226
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttctatgatctttcttaatccttaaatataaaggttgtgctatatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 627
Length adjustment: 9
Effective length of query: 217
Effective length of database: 618
Effective search space:   134106
Effective search space used:   134106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)