BAC Information

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BAC

Clone NameMSMg01-103F23
Chromosome5 (Build37)5 (Build37)
Map Location 31,749,117 - 31,749,43331,899,276 - 31,899,528
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103F23.T7 (MSMg01no103_f23.b1)MSMg01-103F23.TJ (MSMg01no103_f23.g1)
ACCAG318255AG318256
length725713
length of high quality
(start - end)
321 (47 - 367)256 (74 - 329)
definitionCHROMAT_FILE: MSMg01no103_f23.b1 PHD_FILE: MSMg01no103_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:17 2005CHROMAT_FILE: MSMg01no103_f23.g1 PHD_FILE: MSMg01no103_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:17 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(31,749,117 - 31,749,433)(31,899,276 - 31,899,528)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCCATTGATTTCCCGTCTTGAAGCTTTGTTCATAGGACTGATGACTT
GATATGTTGCAGATGTGGCTCATGATTGAACACCGTTGATTTCATAGCTT
GAAGTTGTTGCTTTTGACTTAATTTGTGAGGCTTCCCATCTTGCTTCTGA
TTTCTGGCTTTGAGTCCAGAAGGTACCACATTATAAATTGGTGAGGCCAA
CTCAGAGAATCTCACAACCTGCAAGTCTGCATCATAATTGACCTCTTTAT
CCTTCATTGTTTGCAGATTTGTGTATTTGGTTTTCACATTTTCCAACTTT
ACTCCAGGGTTGAAAGTATCACCCCCCACACCTTGAAGATGTTATTCTCG
TTTTAGTTTAGATAGTTTCCTGTCCTGTAACTCATAGGGCACCTTGAATT
GCAAAGGTTTCCCATCAAGTGCCTCAGAGAAAGTCCATTTAAAAGATTCT
ACATCCTGCCCTAATGGCTGGCACACAAGAGCCGTGGATTTCTCTTTTTG
AACCATGTACCCTGAAATCCCATCAGAAGACCTTACACCCTTAGAATGGA
CCTCTGGAGATCTTCCATCTTGATGCTTTGTCTCTAGAATTGACTTACAA
TCTTTCTGATCTTGCAATTGAGGGCCTGAGTTTAACTTTACCGATTCTCC
ATGTTGAGACTTTGTCTCTGGTATG
CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGGAAAACAATCCCTAATGACTCCC
CTAAAGAGTTCCTCTCTGCCCCTTGCCTGAGAACTTCCGCTGCCTGGAAA
CCCAGCCCAGAGCCAGGTGGTAGCCCCAGGGAACAAGCTTCGCTAAAAGG
GACTTACAGAGCGCCCCAGCTTCTTCCTTCCCGGCATCTGTGGCGCGCGG
CACTTTCCCTGGAGGTTTTCTCATTCCCTCCCCCGAAGGGTGTGGATCAT
TCAAGAACAAAAGGGTGTTATCAGTATCTGATAGGCTCTGCGAGCCGGAA
GGACTTGTGGGTGCAGCGTGGGTGGCAGGCTGGGTTCCCCCACCGCTGAT
GCAATGCAGGAAGAGGCAAGCGCAAACCCACACCTGAAGAGCAGCCTGGG
CCCGCTGACAGGTACAGAGTTCTGAGGCTTGAAGGGATCTGAGAACTCGC
CATCCCAGGTGCCCCTGATCCTGCCTGCAGCTAGCTGATACCTGGCCCTC
AGTCCCCACGTACGATTCCAAGAAGGAAGATCCCAGCGCTAGGGAAACCG
AATTCTGTTGACCTTGCGCCTCCTACTGAAATGTTCCCATAAAGCCTTCC
AGCCTGGCCGTGGCCTCCTTTTCAGACTTAGCTTTCGAGATAGATTTATA
ATGAATGCGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_f23.b1 MSMg01no103_f23.b1 CHROMAT_FILE:
MSMg01no103_f23.b1 PHD_FILE: MSMg01no103_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:17 2005
         (321 letters)



>mm_chr5_31748914_31749634
          Length = 721

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccattgatttcccgtcttgaagctttgttcataggactgatgacttgatatgttg 63
           ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 520 gaattccattgatttcaggtcttgaagctttgttcataagactgatgacttgatatgttg 461

                                                                       
Query: 64  cagatgtggctcatgattgaacaccgttgatttcatagcttgaagttgttgcttttgact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cagatgtggctcatgattgaacaccgttgatttcatagcttgaagttgttgcttttgact 401

                                                                       
Query: 124 taatttgtgaggcttcccatcttgcttctgatttctggctttgagtccagaaggtaccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taatttgtgaggcttcccatcttgcttctgatttctggctttgagtccagaaggtaccac 341

                                                                       
Query: 184 attataaattggtgaggccaactcagagaatctcacaacctgcaagtctgcatcataatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 attataaattggtgaggccaactcagagaatctcacaacctgcaagtctgcatcataatt 281

                                                                       
Query: 244 gacctctttatccttcattgtttgcagatttgtgtatttggttttcacattttccaactt 303
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 280 gacctctttatccttcattgtttgcagatttgtggaattggttttcacattttccaactt 221

                            
Query: 304 tactccagggttgaaag 320
           |||||||||||||||||
Sbjct: 220 tactccagggttgaaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no103_f23.g1 MSMg01no103_f23.g1 CHROMAT_FILE:
MSMg01no103_f23.g1 PHD_FILE: MSMg01no103_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:17 2005
         (256 letters)



>mm_chr5_31899076_31899731
          Length = 656

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggaaaacaatccctaatgactcccctaaagagttcctctctgccccttgcctgagaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 453 cttggaaaacaatccctaatgactcccctaaagagctcctctctgccccttgcctgagaa 394

                                                                       
Query: 61  cttccgctgcctggaaacccagcccagagccaggtggtagccccagggaacaagcttcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttccgctgcctggaaacccagcccagagccaggtggtagccccagggaacaagcttcgc 334

                                                                       
Query: 121 taaaagggacttacagagcgccccagcttcttccttcccggcatctgtggcgcgcggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taaaagggacttacagagcgccccagcttcttccttcccggcatctgtggcgcgcggcac 274

                                                                       
Query: 181 tttccctggaggttttctcattccctcccccgaagggtgtggatcattcaagaacaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttccctggaggttttctcattccctcccccgaagggtgtggatcattcaagaacaaaag 214

                        
Query: 241 ggtgttatcagta 253
           |||||||||||||
Sbjct: 213 ggtgttatcagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)