BAC Information

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BAC

Clone NameMSMg01-103H09
Chromosome5 (Build37)
Map Location 98,068,536 - 98,068,860
singlet/doubletsinglet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103H09.T7 (MSMg01no103_h09.b1)MSMg01-103H09.TJ (MSMg01no103_h09.g1)
ACCAG318322AG318323
length714727
length of high quality
(start - end)
327 (327 - 653)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no103_h09.b1 PHD_FILE: MSMg01no103_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:23 2005CHROMAT_FILE: MSMg01no103_h09.g1 PHD_FILE: MSMg01no103_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTTTTCGTCTTAGCACAGACCCTGTGTGGAATGGTTCGC
AGCTTTTACCTCAACGTAGGCCCTTGTTTGAAAACAAAGATTATAATTTT
GTTGAGTTTGTGTTTATCACCTCTGTCTCACATTGGCAGTTTATTAAGTG
GGCATTCCCCTCATCTACAAATATATATATTTTTAACAGTTGAAGCCTTT
GAAGAAAGGCATTTTTGACTCTCAGTTTTTATTTTATATGGAGTACCTTT
TGACATTAATAAACACTCCACTCTCTGAGAAAACATAGAAGATAATAAAA
CTAATATATAAATTTAGAATACATTTTCTGACTGTCTCAGATGTTCAGCA
TATTAATGCAGCAGGCAAACAAAAGCAGCTCTTGCTTTCACTTTAGACTT
TTGCATTCAACTGCAAAATTCTTCAAAGCCATTTGATCTATTTTCTGAAC
ACTCAAAGGTCTTCCAAGAACTTTCATTTTACAGATGTGATATAAAGTCA
CAAATTGTCTCTTACAAGTCCCCATAAATAAAATCTGGAAAACAAACATC
AGTTTTGCAGATATTATTATGTATTATTTTATAATTTAACCATTTTGAGT
AATTGAATATCTATATTTGGATAGGAGCAAAGCATCCAGGGAAATAGACA
CAATGTACATGGTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCTGAAATATCACCAGAGCAGAAGGAGAAAGAAAAAAAAG
TCAGATATAATAGAATAATTATGCACACCAAGCCCAACTGAAAAGCAGTC
ACGGGCAAATGAAATCTATACAGCTGTTGTCCAGGGCTAAGGTTAGGAGA
AATGGGAACAACTGTTTTTTAACAAAGAGCTGCCATGGGCTACTGAGATG
TCTCCATCCCGGCCTACTGCGGGCAGTCCTTGTTATTGTATGGTGTCCCC
AGAAAAATACTAATATAATTTATTCTTTAAAAATCTATACTAATACAAAC
TCATAGCCTCTTTATTATCTACCCCTCACCCACGGAAAGAAAAATTTCGA
ATTGCAAATTACAAAAACAAATGATAGTTCTAAAATTATTAACATCTAAA
GCTGACACTATATCACTTGAACCTAAGAAAAGAAGACCCAATTATTGAAA
TGTATCTATGAGCATCCTTATTCACAATAGTCAGAAGCTGGAACGAACCC
AGATGCCCTCTCACAGAGGAATGGATACAGAATATGTGCTACATCTACTC
AATGGAGTACCACTCCGTTATTAAAAAGAACGAATTTATTGAAATTCCTA
CCCAAATGGATGTACTCTGCAGGGTATCCATCCTGAGTGACCTTACCCAC
TCTCCCTGTACCTCCCACCACACTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_h09.b1 MSMg01no103_h09.b1 CHROMAT_FILE:
MSMg01no103_h09.b1 PHD_FILE: MSMg01no103_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:23 2005
         (327 letters)



>mm_chr5_98068336_98069060
          Length = 725

 Score =  551 bits (285), Expect = e-161
 Identities = 316/327 (96%), Gaps = 2/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaaacatagaagataataaaactaatatataaatttagaatacattttctgactgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gagaaaacatagaagataataaaactaatatataaatttagaatacattttctgactatc 260

                                                                       
Query: 61  tcagatgttcagcatattaatgcagcaggcaaacaaaagcagctcttgctttcactttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatgttcagcatattaatgcagcaggcaaacaaaagcagctcttgctttcactttag 320

                                                                       
Query: 121 acttttgcattcaactgcaaaattcttcaaagccatttgatctattttctgaacactcaa 180
           ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ac--ttgcattcaactgcacaattcttcaaagccatttgatctattttctgaacactcaa 378

                                                                       
Query: 181 aggtcttccaagaactttcattttacagatgtgatataaagtcacaaattgtctcttaca 240
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||
Sbjct: 379 aggtcttccaagaactttcattttacagatgtgatataaagtcaaaaattgtttattgca 438

                                                                       
Query: 241 agtccccataaataaaatctggaaaacaaacatcagttttgcagatattattatgtatta 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 agtctccataaataaaatctggaaaacaaacatcagttttgcagatattattatgcatta 498

                                      
Query: 301 ttttataatttaaccattttgagtaat 327
           ||||||||| |||||||||||||||||
Sbjct: 499 ttttataatgtaaccattttgagtaat 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 725
Length adjustment: 9
Effective length of query: 318
Effective length of database: 716
Effective search space:   227688
Effective search space used:   227688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)