Query= MSMg01no103_h15.b1 MSMg01no103_h15.b1 CHROMAT_FILE:
MSMg01no103_h15.b1 PHD_FILE: MSMg01no103_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
(313 letters)
>mm_chr5_83732003_83732715
Length = 713
Score = 511 bits (264), Expect = e-149
Identities = 300/316 (94%), Gaps = 8/316 (2%)
Strand = Plus / Plus
Query: 5 gaattcacaaatttccattaagttataattcattaattcatttattttatattttgttaa 64
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 199 gaattcacaaattgcaattaagttataattcattaagtcatttattttatattttgttaa 258
Query: 65 tatgctttttccttcaggtttctctgcattacatatatgaaccagttttttcattctttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgctttttccttcaggtttctctgcattacatatatgaaccagttttttcattctttc 318
Query: 125 tttctttttttttttttttt-------gacttttttttttcttttgaagttgtattcctt 177
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 319 tttcttttttttttttttttttttttggacttttttttt-cttttgaagttgtattcctt 377
Query: 178 taagtagacaatggaggtccttttgagtctttggaatgtctatggcatcttcatcttggt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taagtagacaatggaggtccttttgagtctttggaatgtctatggcatcttcatcttggt 437
Query: 238 gaattatttccctttgttatatgtagaatattgaatttttgttcccatgctactaaagca 297
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct: 438 gaattatttccctttgttatatgtagaatattgaatctagggccccatgctactaaagca 497
Query: 298 tatatagctaagttct 313
||||||||||||||||
Sbjct: 498 tatatagctaagttct 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_h15.g1 MSMg01no103_h15.g1 CHROMAT_FILE:
MSMg01no103_h15.g1 PHD_FILE: MSMg01no103_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
(638 letters)
>mm_chr5_83832641_83833678
Length = 1038
Score = 1152 bits (596), Expect = 0.0
Identities = 623/632 (98%)
Strand = Plus / Minus
Query: 7 ttgatttggtacatagcttatatttgtaaacaaatgacaaagaacaactaactattttca 66
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 838 ttgatttggtacatagcatatatttggaaacaaatgacaaagaacaactaactattttcg 779
Query: 67 taacctctcaaaataagtatatttccacatcttttctttctatttttcagccaatcaatc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 taacctctcaaaataagtatatttccacatcttttctttctatttttcagccaatcaatc 719
Query: 127 tatgagcaaagtcaaatattaatgagtcccttgtcttaatgttgttttatgagaggcgtt 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 718 tatgagcaaagtcaaatattaatgagtcccttttcttaatgttgttttatgagaggcgtt 659
Query: 187 atatatgagaaatgtgggcatttcaacttcagcagagcttatactaaaattaaaagacca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atatatgagaaatgtgggcatttcaacttcagcagagcttatactaaaattaaaagacca 599
Query: 247 ggtggtatattgaaatactattgcatttcttggattaaataatattttaaaagcatatta 306
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggtggcatactgaaatactattgcatttcttggattaaataatattttaaaagcatatta 539
Query: 307 gttgagtcaaaacattctatccccatcacataagtgggagcagaagaaggaggaaccctt 366
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 538 gttgagtcaaaacattctatccccatcacataagtgggaacagaagaaggaggaaccctt 479
Query: 367 cttggcagttgtctttgctttatgtggaattaaaataaaactattgcttcaagggcagat 426
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 478 cttggcagttgtctttgctttatgtggaatgaaaataaaactattgcttcaagggcagat 419
Query: 427 ttagctatcttaatgtgacatttggattttgtattctctaatatgttcaagagatactct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttagctatcttaatgtgacatttggattttgtattctctaatatgttcaagagatactct 359
Query: 487 gttgtttctatctcaagtatatggacacctaattccccaaatgtcttcaatatttctagc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 358 gttgtttctatctcaagtatatggacacctaattccccaaatgtcttcaatatttttagc 299
Query: 547 agaatatgtgtctttctacatctaaaaaatattaatgatagatttttctataaagaaata 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agaatatgtgtctttctacatctaaaaaatattaatgatagatttttctataaagaaata 239
Query: 607 gaaaaaattagaaagaatgaaattaaaaggaa 638
||||||||||||||||||||||||||||||||
Sbjct: 238 gaaaaaattagaaagaatgaaattaaaaggaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
