BAC Information

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BAC

Clone NameMSMg01-103L24
Chromosome5 (Build37)
Map Location 152,210,418 - 152,210,906
singlet/doubletsinglet
Overlap geneLOC100042166
Upstream geneFry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175
Downstream geneEG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103L24.T7 (MSMg01no103_l24.b1)MSMg01-103L24.TJ (MSMg01no103_l24.g1)
ACCAG318541AG318542
length741720
length of high quality
(start - end)
304 (85 - 388)489 (71 - 559)
definitionCHROMAT_FILE: MSMg01no103_l24.b1 PHD_FILE: MSMg01no103_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:46 2005CHROMAT_FILE: MSMg01no103_l24.g1 PHD_FILE: MSMg01no103_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTTCCTNCTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCC
AAATCCGCGGAATTCTTTGTTCAGTTCTCAGCCACATTTTTTAATGGGGT
TATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGAT
ATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTT
GCAATTTTATGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCC
ATTACTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATTTTCGAGACT
TTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGCCTTATGCGGA
GTTCCTTAATCCACTTAGATTTGACCTTACCACCCCGAGATAGAAATGGA
TCAATTCGCATTCTTCTACATGATAACCACTAGTTGTGCCAGCACCATTT
GTTGAAAATGCTGTCTTCTTTCCACTGTATGGCTTTAGCTCCCTTGTCAC
AGATCACGTGTCCATACGTGTGTGGCCTCATTTCTGCGCCCTCTATCCTG
TCCCCTTGGTCTACTTGACTGTCCCTATACTTTTATCTTGCTCGATTTGA
TTTTTTTTGCCCCTGCACACGTTCCTTGGTTTTGCGCCGTTCATTCTTAC
CATAGCTTTTTTCATCTCTGGTAACATCCTCTTGGATTCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGAACTATTTCTAAACCATTGTATTTTC
AGGTAATAGCTATCTTTAAAAGATTCTGTCCTGGGGATTGGAGAGATGGC
TCAGCAATTGCAGAAGACCAGGGTTTGATTCCCAGCACTACATGGTGGCT
CACAACCATCTGTAATTCTGATTTTAGGAGGATATGGTATCTTCTTCTGG
CCTCTGTGGGCACTGAACACATGTGGTTCATATAAATACATGCAGGTAAT
AATCCTAGACTCCTAAAAATAAATCTTCTAATAAAATAAAGACTCCAGAA
CCCTTTATCCCAAAAACATTAATATGTGAGTGTCCTTTTCCCTTTTTGCA
TATAATAAAGTGCCTGAGAGCCTTGTTTTGGGAGAGTGAAGGCCAATGAG
CAGTGTACCCTGTTGCTGGTTTTCTTATTGTATAATCACGTGACTATTTT
CAGTGGTGATGAAAGAAACACCCTGTCACATGCTTATGCCTAGCTCTCTC
CTGACTGGTCCATGAGGTTGGGTGTTTTTTTTTTTGAGTCTGGAATACTT
TATCATCCTGATAGCTAACCTCTGGTGTCCCGCACCCTGTAAAATGCCAC
GTACTCTGGTCAAGTCTGCTTGACAGGCTGAGAATTCTGAAAGCACTCCT
TCTGACACGTGTGACCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_l24.g1 MSMg01no103_l24.g1 CHROMAT_FILE:
MSMg01no103_l24.g1 PHD_FILE: MSMg01no103_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:46 2005
         (489 letters)



>mm_chr5_152210218_152211106
          Length = 889

 Score =  930 bits (481), Expect = 0.0
 Identities = 487/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaactatttctaaaccattgtattttcaggtaatagctatctttaaaagattctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgaactatttctaaaccattgtattttcaggtaatagctatctttaaaagattctgtc 260

                                                                       
Query: 61  ctggggattggagagatggctcagcaattgcagaagaccagggtttgattcccagcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggggattggagagatggctcagcaattgcagaagaccagggtttgattcccagcacta 320

                                                                       
Query: 121 catggtggctcacaaccatctgtaattctgattttaggaggatatggtatcttcttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggtggctcacaaccatctgtaattctgattttaggaggatatggtatcttcttctgg 380

                                                                       
Query: 181 cctctgtgggcactgaacacatgtggttcatataaatacatgcaggtaataatcctagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctgtgggcactgaacacatgtggttcatataaatacatgcaggtaataatcctagac 440

                                                                       
Query: 241 tcctaaaaataaatcttctaataaaataaagactccagaaccctttatcccaaaaacatt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctaaaaataaatcttcaaataaaataaagactccagaaccctttatcccaaaaacatt 500

                                                                       
Query: 301 aatatgtgagtgtccttttccctttttgcatataataaagtgcctgagagccttgttttg 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatgtgagtgtccttttccccttttgcatataataaagtgcctgagagccttgttttg 560

                                                                       
Query: 361 ggagagtgaaggccaatgagcagtgtaccctgttgctggttttcttattgtataatcacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagagtgaaggccaatgagcagtgtaccctgttgctggttttcttattgtataatcacg 620

                                                                       
Query: 421 tgactattttcagtggtgatgaaagaaacaccctgtcacatgcttatgcctagctctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgactattttcagtggtgatgaaagaaacaccctgtcacatgcttatgcctagctctctc 680

                    
Query: 481 ctgactggt 489
           |||||||||
Sbjct: 681 ctgactggt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)