BAC Information

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BAC

Clone NameMSMg01-103M11
Chromosome5 (Build37)
Map Location 124,790,293 - 124,790,542
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik
Downstream geneCdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103M11.T7 (MSMg01no103_m11.b1)MSMg01-103M11.TJ (MSMg01no103_m11.g1)
ACCAG318563AG318564
length715712
length of high quality
(start - end)
249 (72 - 320)---
definitionCHROMAT_FILE: MSMg01no103_m11.b1 PHD_FILE: MSMg01no103_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:48 2005CHROMAT_FILE: MSMg01no103_m11.g1 PHD_FILE: MSMg01no103_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCCTAGTCTCTCATCCACCCTTTCTGTCACAGGAGCCCCTGTGAG
TCAGCCACAGTGAGGACCACAGCCCTTCTGCATGTGGCTCACGGTCTCTG
CAGCACACACTAGTTGTATTGTGGGACTCCCTCTTGAATAATTATGAATG
GGTTTTTTTGGGCCAGGTGTTAGGGAGAGACAGTGGATCTTTGAGTTTGA
AGGCAGCCTGGTTTACATACCAATACCCTGTCTTTTAAAAAATTAGAAGA
TTTTATATTTAGAAGCAACAGTTTTTTAAAATATTAGTGTATTTAATTTG
CATGAGTGTTTAGCTTACCTGTATGTCTGCGTAACATGTTCATGCTTTGG
GCCCATGGAGGCCAGAAGAAGTCAGATCTGAGACTAGAATTACAGCCAGT
CGTGAGCCATGGGAATTAAACCCAGGTCCTCTGGAAGAGCAGCCAATGCT
TTTAATCACTGAGCCATCTCTCCAGCCCCAACAATCACTTTCAAACCGAT
TTAAGCCCTTCCCAAGAAACTATGAAATCTAGCTTGTCCGGAAGCAACTG
TGCAAAATTCGCATGCCATTCACAAGTGGAGCTGTCTGAGACGGGGACAC
ACCTTCTCTGACAGCGACTCACCACACTCAGTGTGAAACTAATGGTGTCG
AGGGGTCCAGCAAAG
TCATTGAAGTGGGAGGCCGGGNGGNCGCCTACCCCGACCCGCNGGGNGAA
CNANAGATTTACGGGACGGAGGCGGANACANCCGGAAAACAACCGGCCAA
GAGAAANAAGCAGGCCACCCCCAGGAAAAGAGCANCCANAACACGAGGAA
GCGAGGAACACAGACAGACGGGCAGAGACAGACAGGAGAACCCGGGGGGG
GGACGCCGCAAGGCCGGAAGGAACGAAGACGGCAGGCAGGCAGACAGATG
TGTAGCCCGACGCAAAGCAACCCACGACACAGACCCCCGGAGGACCGCGC
GCCCAGCAACAATTTTTTTTTTTATCAACACCGGGGCGCCCACCCCCGAA
CAGAATATGGCCCCCCCCCCCCGCACCCACACAATAACCACCACGGCAAC
AAAAACAAAGAACCACCCACCAGAACAGCCCCCTGTGCGCATGCACCGCG
GCCGATAACGCGCAACGGCGGCAGCAACCCCCACTACGGAAACCAGCATC
CCGAACGACACCGACAAGGTAGAAGCCAGCCCCAAACCCGGCAAGAGGAG
GCCAGCCCGAATCCCCGCCGGAGCCACCAAACCACACACCGGCCCCGAAG
CAAATTGCCCGGGCCCCCCCCGCCCCCGTAAAGCGGCCGCCCCCGACCCC
ACACTATTCACCACGCCCCCACCCGCCCAATCCGCCCACACTGCACAACC
CCCCGCACGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_m11.b1 MSMg01no103_m11.b1 CHROMAT_FILE:
MSMg01no103_m11.b1 PHD_FILE: MSMg01no103_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:48 2005
         (249 letters)



>mm_chr5_124790193_124790841
          Length = 649

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctttctgtcacaggagcccctgtgagtcagccacagtgaggaccacagcccttctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 accctttctgtcacaggagcccctgtgagtcagccacagtgaggaccacagcccttctgc 291

                                                                       
Query: 61  atgtggctcacggtctctgcagcacacactagttgtattgtgggactccctcttgaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atgtggctcacggtctctgcagcacacactagttgtattgtgggactccctcttgaataa 231

                                                                       
Query: 121 ttatgaatgggtttttttgggccaggtgtt-agggagagacagtggatctttgagtttga 179
           ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct: 230 ttatgaatgggttttttggggccaggtgttgagagagagacagtggatctttgagtttga 171

                                                                       
Query: 180 aggcagcctggtttacataccaataccctgtcttttaaaaaattagaagattttatattt 239
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 agggagcctggtttacatagcaataccctgtcttttaaaaaattagaagattttatattt 111

                     
Query: 240 agaagcaaca 249
           ||||||||||
Sbjct: 110 agaagcaaca 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)