BAC Information

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BAC

Clone NameMSMg01-103P24
Chromosome5 (Build37)
Map Location 92,402,520 - 92,403,013
singlet/doubletsinglet
Overlap genenone
Upstream gene1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6
Downstream geneGm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103P24.T7 (MSMg01no103_p24.b1)MSMg01-103P24.TJ (MSMg01no103_p24.g1)
ACCAG318725AG318726
length739726
length of high quality
(start - end)		245 (92 - 336)505 (62 - 566)
definitionCHROMAT_FILE: MSMg01no103_p24.b1 PHD_FILE: MSMg01no103_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:05 2005CHROMAT_FILE: MSMg01no103_p24.g1 PHD_FILE: MSMg01no103_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTATCTCTTATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
AAATACGCGGAATTCTTTTGTAGGTTTTCTGATAAGAGAAATCTTCATGT
GTTAGCTTCCTAAGTGCTGGAATGATAATTATGAGCCACTATGTCTGGCT
TCATCTTTGACATGTTGTTTTCTGGGAGCTGAGGATCAAACATGTGCTTC
CCACATCCCAGGCAATTACTATACCAGTGAGCTGTGTCTGTAGCCCTCAG
CCCTTTTCATGGAGAAGGAAATGATTGAAGAAGGGCAGTAAGTAACTGTG
ACAGGTGACAGAGCACAAGGACCAAGGTTTGATGGTTTATTTCTCCATCT
GGTCTGCACCCTGCTCCCCACCCCCTTGCTTTTCCACTCCAGCCTCTAGT
CATTGGCTGCTTCCAATGATAATCTTCACTTCACTTACTTTCCCAGATAA
ACTATCATCTTTGTGAAATGGGAGAACTAACCAGTACGATCAGGTGTCCA
CCTACACAGATAATTTTCCTCAGTTGTTTTCATAGCGTCTCACACCTAAG
TGACCTTGCCTAAACCCTTGTGAACAATGCGAGATTGAGACTGATTTTCT
GCCCCCTTGGTCTCTCAAGTTGGCCCTTCCCGTGTTCTTAAGCTTACCCC
CCATCAGATCCTCTGACTTGCCATCCATATAATCCGCCTTAAATCACAAC
CACACGCCCGGCCCTTCCCTTACCCCACGTCCGGCTTGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCTAATTCCCTCCTCCCACCAACCTGAATTTCTCTGA
GCATCTACAAAGCAGACAATACAAGAGAAAGCTTGTGTAAAGCCCAAAAC
ATACAATGCACTTTCCATGTAGTGTTTTTATCTTTTAAATTCCATCTCAG
AAATACTGGAAAAGGGGCCAGAACCAGAGGGAAAAAAATAACAAGAGGAA
GAAACACATGCAGGGGCTGATGGCAGTATTGAGGGCTGATAGCAGTCTTG
AGAAACATGATCAGGGAGATTGTTTGTATCTTAAAAACATCTTCCCCGTC
TTGTGACAACTGAAAGTGGTCAAAGAATATGGTCCCACTTAAAGAGGATT
TTACTTTGTTTTTGTGGAGAATCTTTCCTCCATCCTTCCACCCCAACTCT
TACATGCCGTTTAAATTCATTTTGGATATAATTGTTTCACTCATCCAATC
TCATAAAATGTAAATAACGCGCTGCTCAAAATGTGGCTCGCAGATTGGTT
TTCAAGTGAACTCGTCCCAGAATGTACATTAACGATGTCACGAAGCACAG
ATTGATTCAGTCCATGATGGATTTTCTCGTGAATGGAGCACTGTTAGAAT
TGATATTCTGAAAGAAGTGTCATATCTCACTCTGGAATAGTCGCAGCTCA
TACTCTGTGTCCTTGTAGCCCTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_p24.g1 MSMg01no103_p24.g1 CHROMAT_FILE:
MSMg01no103_p24.g1 PHD_FILE: MSMg01no103_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:06 2005
         (505 letters)



>mm_chr5_92402315_92403215
          Length = 901

 Score =  897 bits (464), Expect = 0.0
 Identities = 488/498 (97%), Gaps = 4/498 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccctcctcccaccaacctgaatttctctgagcatctacaaagcagacaatacaaga 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattccctcctcccaccaacctgaatttctctgagcatctacaaagcagacaatacaaga 265

                                                                       
Query: 66  gaaagcttgtgtaaagcccaaaacatacaatgcactttccatgtagtgtttttatctttt 125
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct: 266 gaaagcttgtgtaaagcccaaaacatacaatgcactttccacgtaatgtttttctctttt 325

                                                                       
Query: 126 aaattccatctcagaaatactggaaaaggggccagaaccagagggaaaaaaataacaaga 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 326 aaattccatctcagaaatactggaaaaggggccagaaccagagggaaaaaaacaacaaga 385

                                                                       
Query: 186 ggaagaaacacatgcaggggctgatggcagtattgagggctgatagcagtcttgagaaac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggaagaaacacatgcaggggctgatggcagtattgagggctgatagcagtcttgagaaac 445

                                                                       
Query: 246 atgatcagggagattgtttgtatcttaaaaacatcttccccgtcttgtgacaactgaaag 305
           |||||||||||||||||    | |||||||||||||||||||||||||| ||||||||||
Sbjct: 446 atgatcagggagattgt----accttaaaaacatcttccccgtcttgtggcaactgaaag 501

                                                                       
Query: 306 tggtcaaagaatatggtcccacttaaagaggattttactttgtttttgtggagaatcttt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tggtcaaagaatatggtcccacttaaagaggattttactttgtttttgtggagaatcttt 561

                                                                       
Query: 366 cctccatccttccaccccaactcttacatgccgtttaaattcattttggatataattgtt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctccatccttccaccccaactcttacatgccgtttaaattcattttggatataattgtt 621

                                                                       
Query: 426 tcactcatccaatctcataaaatgtaaataacgcgctgctcaaaatgtggctcgcagatt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcactcatccaatctcataaaatgtaaataacgcgctgctcaaaatgtggctcgcagatt 681

                             
Query: 486 ggttttcaagtgaactcg 503
           ||||||||||||||||||
Sbjct: 682 ggttttcaagtgaactcg 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 901
Length adjustment: 10
Effective length of query: 495
Effective length of database: 891
Effective search space:   441045
Effective search space used:   441045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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