BAC Information

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BAC

Clone NameMSMg01-104G10
Chromosome5 (Build37)
Map Location 76,135,434 - 76,135,732
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit
Downstream geneEG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G10.T7 (MSMg01no104_g10.b1)MSMg01-104G10.TJ (MSMg01no104_g10.g1)
ACCAG319023AG319024
length689692
length of high quality
(start - end)
416 (67 - 482)303 (77 - 379)
definitionCHROMAT_FILE: MSMg01no104_g10.b1 PHD_FILE: MSMg01no104_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:39 2005CHROMAT_FILE: MSMg01no104_g10.g1 PHD_FILE: MSMg01no104_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATCTATATTTGCGGCGCTATACGACTCCTATCCAAGAGGACCGCGGA
ATTCACCTTTCTCGGCCACCTTTCAGAGATCCCATACGATTCTTCCCCAT
CTGTTTTTAAAAACAGAACCAAGATGGTGCGGTGTCTAAAAGTACTTGTG
AGGTTTAAGACTTGACAAGATCTGGAATCACCTAGGAGACAGATCTCTGA
ACATGTCTGTGGGAGGTTTTAGACTGGAATAGTTAAGGTAAGAAGATCCT
CTCTACATGTGAGTGGCAACACTCTATGCACTGGAGTCCTGCATGAGTAG
AGGACAAAGAGAGTCGAGAAGCTGTGTTGATCACATTTTTTGCTTTCTGA
CTGCATATGCAATGTGCCCAGCCTCATGATCCCACCTCCACATCCCGGTA
GACTGTACCTACCCCTGCACTCCGAGCCAAAGCAAACTCCTCTTTCCTGA
AATTGCTCTTGTCAGGCAATTTGTCACAGCAACAAGAAAAGTAAGGTATA
CAGTGCCCCTCCAAGTTAGCTAAGTCTGTTTGAAGTTTTCCCCATTTATT
AACGGAATGACTTAGCAGATGTCAAAAATTCTCCCTCCGATTGAAATTTC
TTGCATAGACGTTTACACCCATAACATGCCACCATTTCTAGAATACCTGA
TTGCTGGTTTTGTATCTCAGCGATATGGAACTTACTTAG
ATCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGATCACAAAACATGGCCATGTGC
TCTGGGAAGATGTCTTCTGCCAACTCCGTCTTCACAAAGGCACTTTTAGT
AATGAGCCTTGGCACCGGAGTAAGCCGCATCCTGCCCCAGGGTGGGTCCC
GCCATTGTCCTCTGTGGGCAGCCACAGGGAGCCAAAGATGTCATACTGTC
CGAGGGTGTGCCACCTGGGAAACCACTTTAAAGACAACAGTGGTGCTGGC
TCCCAGGCCCGCCCTTCTCATACAGTCTCAGTGTTAACATCTTTAAGAAA
AGTCCCCCTTCTTTCATGTCCCATGAAGCAGGAGGCAAGTGAGATTCCAC
ACAGCAAAGGCAATAGCGACTCCATAGCAATCATCTTATACAGCACGGCT
CACACCAGTTCTGGCTCATTGAGGACATTAGGGGGTGAGACTATTTGTCC
CTTAAAGACTCCAATTTCAGAATTTCAAATCGCTCACGGTCTTTTATCAT
TTGTCATTTATGCGCGTTAATCAAATTATTCACATGTTTTCATTTTCTTC
CTATAAACACATTCTTTTATAATACACTTAATACCCTTTCCCCAGCTTAT
TGTTTATTGAAAGACAACGCCAAAAGGCGCCTTTCTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g10.g1 MSMg01no104_g10.g1 CHROMAT_FILE:
MSMg01no104_g10.g1 PHD_FILE: MSMg01no104_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:39 2005
         (303 letters)



>mm_chr5_76135230_76135932
          Length = 703

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   cacaaaacatggccatgtgctctgggaagatgtcttctgccaactccgtcttcacaaagg 64
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 205 cacaaaacatggccatgtgctctgggaagaagtcttctggcaactccgtcttcacaaagg 264

                                                                       
Query: 65  cacttttagtaatgagccttggcaccggagtaagccgcatcctgccccagggtgggtccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacttttagtaatgagccttggcaccggagtaagccgcatcctgccccagggtgggtccc 324

                                                                       
Query: 125 gccattgtcctctgtgggcagccacagggagccaaagatgtcatactgtccgagggtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccattgtcctctgtgggcagccacagggagccaaagatgtcatactgtccgagggtgtg 384

                                                                       
Query: 185 ccacctgggaaaccactttaaagacaacagtggtgctggctcccaggcccgcccttctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacctgggaaaccactttaaagacaacagtggtgctggctcccaggcccgcccttctca 444

                                                                      
Query: 245 tacagtctcagtgttaacatctttaagaaaagtcccccttctttcatgtcccatgaagc 303
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccagtctcagtgttaacatctttaagaaaagtcccccttctttcatgtcccatgaagc 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)