BAC Information

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BAC

Clone NameMSMg01-105A01
Chromosome5 (Build37)
Map Location 98,334,463 - 98,334,881
singlet/doubletsinglet
Overlap geneAntxr2
Upstream geneEG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneEG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A01.T7 (MSMg01no105_a01.b1)MSMg01-105A01.TJ (MSMg01no105_a01.g1)
ACCAG319471AG319472
length686682
length of high quality
(start - end)
537 (48 - 584)418 (72 - 489)
definitionCHROMAT_FILE: MSMg01no105_a01.b1 PHD_FILE: MSMg01no105_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:28 2005CHROMAT_FILE: MSMg01no105_a01.g1 PHD_FILE: MSMg01no105_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTTTGACATCCTGATCATGTGGAAAATTGTTGCTTCTCCTAG
TACCCATGCTCTGTCCCCTCATAAGCTTTTGACAAGGTTTATAGATAGTA
TCAGACATAAAATCCTACAAAGCAGGCTTCATAGCCCATCGGATATTAGT
TTATTAATCCCTAACTATATGCCACTATTGTACCTGTGGACATGTTTTGC
TGGGTAGGCTGGTATTGTAGCATATAGGATCAGGTACTGGGTAAGACCAT
TGATGTTTTTCTCCCCTTGCAGCCTGCACAGTGTTCCCTGACATGATGTA
AACTGGTGAGTTCTCTGTCTCCTACATCCAAAGTGAATGGTCTTCAGCAA
TAGGGTTTTTGTTTTTGTTTTTGTTTTTCAAGCAGGGTTTCCCTGTATAG
CCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCCTGGGGCCTTTGTA
GATCAGTGCTGGGATCAAAGGCCCTGGCTTCAGCAATAGGGTTTTATCAC
CTGGCTATGCTAAGCAGCCAAGGGCAATGACAGTAATTTGCATTGCACTG
GTGCCTCTGGGACCTGAGTCACCAGGAACTCCTGTGTCTATGCAAGAGCT
GCCAATCAAGGGTAAAGTCTCATGCTTGGCCTTGGT
AACATGCAGTGATAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGATGAAATGAATTTAAATATACAGGTGA
AGAAAGGGTTCAACAGGGGAGAAAGCATAAGACAGTGCAATGAAAAAATA
TATTTTTTCAAATTATCAAAGCAAAACATATTGTTATGAATATAATAAAA
AATTGAATCAAAAGAATTAATTTCTCTATAGTTACTGAGACTTTGGCTGT
AAAAAAATAAAACTTTTTTAAAAAATTAACTCCCCAATTAACTTTTTAAA
ATATGATGACCTTCAATTACAAATTATTATATGATTATTTATAAATATGA
TCATGTTTGTTTTATTTATCATGCAGTTGATTCCCTATCATGTAACAAAA
CTGTTGATGGCATGTACATACTAATGTTTAATATGTGTTTTCACAATGCA
AATATTCAAGAAAATGCATACCAGTTTACAAGTCTACTAAGAATAATATG
GTAGAAATATTACTGACTTGATTTAAATAGGATGCTTAATGGAGTTGGAA
AACTATTTATTCTGCATAATAGTTACAAAATCCATGATTGAAACTAAAGC
ACTTACCCTAACAGTTTAAAGAGGAAGGGGGGAAAAGTTGGGTTTCCTGC
CCATCTCTACGCCGGCTCCCAAACAGTGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a01.g1 MSMg01no105_a01.g1 CHROMAT_FILE:
MSMg01no105_a01.g1 PHD_FILE: MSMg01no105_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:28 2005
         (418 letters)



>mm_chr5_98334264_98335081
          Length = 818

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%), Gaps = 1/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgatgaaatgaatttaa-atatacaggtgaagaaagggttcaacaggggagaaagcataa 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cgatgaaatgaatttaagatatacaggtgaagaaagggttcaacaggggagaaagcataa 259

                                                                       
Query: 60  gacagtgcaatgaaaaaatatattttttcaaattatcaaagcaaaacatattgttatgaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacagtgcaatgaaaaaatatattttttcaaattatcaaagcaaaacatattgttatgaa 319

                                                                       
Query: 120 tataataaaaaattgaatcaaaagaattaatttctctatagttactgagactttggctgt 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 320 tataataaaaaattgaatcaaaagaattaatttctctaaagttactgagactttggctgt 379

                                                                       
Query: 180 aaaaaaataaaacttttttaaaaaattaactccccaattaactttttaaaatatgatgac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaaaataaaacttttttaaaaaattaactccccaattaactttttaaaatatgatgac 439

                                                                       
Query: 240 cttcaattacaaattattatatgattatttataaatatgatcatgtttgttttatttatc 299
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 cttcaattacaaattattatatgattatttataaatatgaccatgtttgttttatttatc 499

                                                                       
Query: 300 atgcagttgattccctatcatgtaacaaaactgttgatggcatgtacatactaatgttta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgcagttgattccctatcatgtaacaaaactgttgatggcatgtacatactaatgttta 559

                                                                      
Query: 360 atatgtgttttcacaatgcaaatattcaagaaaatgcataccagtttacaagtctacta 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atatgtgttttcacaatgcaaatattcaagaaaatgcataccagtttacaagtctacta 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)