Query= MSMg01no105_a06.b1 MSMg01no105_a06.b1 CHROMAT_FILE:
MSMg01no105_a06.b1 PHD_FILE: MSMg01no105_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:29 2005
(361 letters)
>mm_chr5_67518426_67519186
Length = 761
Score = 565 bits (292), Expect = e-165
Identities = 342/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Plus
Query: 4 ggaattcca-cttgttgtactgactatccctgttaactcaggaaatgccatccaaaactt 62
|||||| || ||||||| | || ||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaatt-caccttgttgaagtggctatcccagttaactcaggaaatgccatccaaaactt 262
Query: 63 caagcaccaagatgctgaagaagagattgttacaataagggggtccagcaagtgagaaca 122
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 caagcacccagatgctgaagaagagattgttacaataagggggtccagcaagcgagaaca 322
Query: 123 atgacccagccttggaaatggcatggggtagatgttcaaagaaaggtgtacctacaagat 182
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct: 323 atgacccagccttggaaatggcatggtgtagttgttcaaaggaaggtgtacctacaagat 382
Query: 183 gatgccgtgcaaacattcaatgccattagtcattgtattggctggttttgtgtcaacttg 242
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 383 gatgccgtgcaatcattcaatgccattagtcattgtattggctgattttgtgtaaacttg 442
Query: 243 acacaatctggaattatcacagaaaaaggagcttcagttaaggaaatgtctctgtgagat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acacaatctggaattatcacagaaaaaggagcttcagttaaggaaatgtctctgtgagat 502
Query: 303 ccaactgtaaggcattttctcaattagtgatcaa--agggggagagcccaggccactgtg 360
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 503 ccaactgtaaggcattttctcaattagtgatcaagcaggg--agagcccaggccactgtg 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_a06.g1 MSMg01no105_a06.g1 CHROMAT_FILE:
MSMg01no105_a06.g1 PHD_FILE: MSMg01no105_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:30 2005
(270 letters)
>mm_chr5_67648742_67649411
Length = 670
Score = 474 bits (245), Expect = e-138
Identities = 254/257 (98%)
Strand = Plus / Minus
Query: 11 cagcagtgtccccctcatgtgaggtttcactcagtgaagctgcacgccgatctgcagcca 70
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 310 cagcagtgtccccctcatgtgaggtttcactcagtgaagctgcacgccaatctgcagcca 251
Query: 71 accatgtagaaaaaactaaagtagaaactccagaaaaatctggtggacatctgtcatccc 130
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 accatgtagaaaaaactaaagtggaaactccagaaaaatctggtggacatctgtcatccc 191
Query: 131 cgttcttgagagatgaggaagcaggatgaggagtttaataaggtcatcctcagctactcg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 190 cgttcttgagagatgaggaagcaggatgaggagtttaataaggtcatcctcagctacacg 131
Query: 191 gggagtttaaggccagcctgggctatgtggggttttgtttttaaaaaggagaagaaaacc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gggagtttaaggccagcctgggctatgtggggttttgtttttaaaaaggagaagaaaacc 71
Query: 251 tccaggggaatttttag 267
|||||||||||||||||
Sbjct: 70 tccaggggaatttttag 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
