BAC Information

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BAC

Clone NameMSMg01-105B12
Chromosome5 (Build37)
Map Location 134,101,504 - 134,101,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731
Downstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105B12.T7 (MSMg01no105_b12.b1)MSMg01-105B12.TJ (MSMg01no105_b12.g1)
ACCAG319540AG319541
length698715
length of high quality
(start - end)
492 (42 - 533)290 (88 - 377)
definitionCHROMAT_FILE: MSMg01no105_b12.b1 PHD_FILE: MSMg01no105_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:36 2005CHROMAT_FILE: MSMg01no105_b12.g1 PHD_FILE: MSMg01no105_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGGAA
TTCCAGACATATCCTTTTGGGTGCCAAGCTGAAAGACAAAGAGATGAGCA
AACAGGACCCTTTCTAATGTTTGACTCATTCCTGTGAATGCAAATGTACC
CCAGGGGCTCATAGGTTTGAGCACTTCTTTCCCAGCAGGTGGTGCTCTTT
GATAAGGTTGTGGAACCTTTAGGACTCTGGCCTAGCTTGCAGTAATGGGT
CACTGGGTATTGGATAGCAATTTCCTCTAATTGAAAATATCTTGGTTCTG
TCTTGGGCTCCCTATCTCAAAGGAGTAGATTGGGGGGGGTTCTCCCCAAG
AAGTGGAAAGCCTGGGAGGTGATGATATCCGTTTCTAATTTGTGCCCAAG
CCCTTTGTTTTCTCATCCACTAAGATTTGTAGTGCCTCCCTCACATACCC
CCACCACAGTGAGCCCCACCATGCCTACCTATCAGGACAGACTAGGACTG
TCAACCCTGATAAATTACTCCTTCCTTAAGTTGCCTCTGTCAAGCATTTT
GAGTAATGACATAATGAAACCAATATAGGCACTTTTCCACGCGCGGTTGA
ACTCTTATTGTTTTGTGCCCAGAATTGACCACATTCACTAGAACTTACTG
CTCCCTCAGCATGTGTCATGCGCCCTTTCAAAGAATGGAGCGTCTCAN
CCTAAGATCGTTCTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTCAGTGAAC
CAGTGAGTTTAAGGAGTATGCTTACAGACTGTGAACGACAGATTGCTGAC
AGAAGGATAGATGACCCAAAGACAGCTGTGTCACTAGAAAGTCCAGTCCA
GCATCAGTGATGACTCACAGAAGCTGCATCCTGGGTTTACAAAAGACTTG
CAGGCAGCTTGGCTGACAAGAAAGTCTCTTTATCCCAATAGTCGCGTTTT
GCTTGAATAACCTTGGAGACTTTTTGACTCTTGTTTCAGGAACTTCCTGA
GACTTGTTAATTGCTTTCTTCTTGAGGTATACATTTTGTTTACTTTCAGG
CTTTTAAGGAACCTCGTCTATGTAGAGGAAATAACCACAGATCAGGCAAC
CAGCGACATCTCAAGAGTCATGTAACAGGAGGACACATTTACAAGATAGC
AATATGGCAATTCATCATAGGTCAAGAACTTATAAGCAACAGTAACATTG
ACTCTTTTGGCAGCCCCTTTCACCATTGATTCTCCCTATTGTCACCCATA
ATATTTTCGCATTTCTAAAACCTTCAATTGGCCTGAATTCCAGGTGTTTG
TGCCCCTACCTTGCTGATGCTTAATATCGCACCACCATCCATATTGCTTC
GTACACCATGTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_b12.b1 MSMg01no105_b12.b1 CHROMAT_FILE:
MSMg01no105_b12.b1 PHD_FILE: MSMg01no105_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:36 2005
         (492 letters)



>mm_chr5_134101297_134102189
          Length = 893

 Score =  808 bits (418), Expect = 0.0
 Identities = 470/488 (96%), Gaps = 4/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccagacatatccttttgggtgccaagctgaaaga-caaagagatgagcaaacagg 65
           |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 208 gaattccagacatat--ttttgggtgccaagctgaaagaacaaagagatgagcaaacagg 265

                                                                       
Query: 66  accctttctaatgtttgactcattcctgtgaatgcaaatgtaccccaggggctcataggt 125
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 266 accctttctaatgtttgactcattcctgtgaatgcaaatgtcccccaggggctcataggt 325

                                                                       
Query: 126 ttgagcacttctttcccagcaggtggtgctctttgataaggttgtggaacctttaggact 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgagcacttctttcccagcaggtggtgctctttgataaggttgtggaacctttaggact 385

                                                                       
Query: 186 ctggcctagcttgcagtaatgggtcactgggtattggatagcaatttcctctaattgaaa 245
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctagcctggcttgcagtaatgggtcactgggtattggatagcaatttcctctaattgaaa 445

                                                                       
Query: 246 atatcttggttctgtcttgggctccctatctcaaaggagtagattg-gggggggttctcc 304
           || ||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||
Sbjct: 446 atttcttggttctgtcttgggccccctatctcaaaggagttgattgtggggggggtctcc 505

                                                                       
Query: 305 ccaagaagtggaaagcctgggaggtgatgatatccgtttctaatttgtgcccaagccctt 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 506 ccaagaagtggaaagcctgggaggtgatgatatccgtttttaatttgtgcccaagccctt 565

                                                                       
Query: 365 tgttttctcatccactaagatttgtagtgcctccctcacatacccccaccacagtgagcc 424
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct: 566 tgttttctcatccactaagatatgtggtgcctccctcacatacccccaccacaatgagcc 625

                                                                       
Query: 425 ccaccatgcctacctatcaggacagactaggactgtcaaccctgataaattactccttcc 484
           ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccaccatgcctacataccaggccagactaggactgtcaaccctgataaattactccttcc 685

                   
Query: 485 ttaagttg 492
           ||||||||
Sbjct: 686 ttaagttg 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space:   425606
Effective search space used:   425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)