BAC Information

Click to search

BAC

Clone NameMSMg01-105I12
Chromosome5 (Build37)
Map Location 54,809,900 - 54,810,290
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105I12.T7 (MSMg01no105_i12.b1)MSMg01-105I12.TJ (MSMg01no105_i12.g1)
ACCAG319862AG319863
length712699
length of high quality
(start - end)
487 (40 - 526)399 (71 - 469)
definitionCHROMAT_FILE: MSMg01no105_i12.b1 PHD_FILE: MSMg01no105_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:11 2005CHROMAT_FILE: MSMg01no105_i12.g1 PHD_FILE: MSMg01no105_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCTGTTGATTGCGCTGCTCTGTGTGATCTAAAGACTTATATTGACCCAAG
TCAGCGTGTGAAAACATGATCCCCTCCTTGCAAGTATTAGGAGATGGATC
CCTTAGAAGGAAAGAACCTCCACTATAGGATTAATAACCCCTAAAAAGAG
ACTCCAGACAACTGTCACTCCCCTTCCACAGAAAAATGCACACAAGAACG
CTGCCCTCATCAAACACCAAATTAACTGATGCTTTGAATTTGGACTTCCC
ACCTATGTTAGTCAGGGTTCTCTAGATTCATAAGAATTATGTAATGGATT
CTAATAAATCCCATGTATATACATACACACATATCTATATAACATATATA
TATACATATCTGTATAACATATCTATATATACACATATATATGTATATAC
ATACGTGTGTGTATATGTGTGTATGTTGCATACTTATACATAATATATAT
GTATTTATATGTATATATATATATGTGTGTGTGTGTGTCCGTATAACAAT
GAACAATTACCATTACTTATTACCCTTTTTCTTCTTCATATTTCTCTTTT
TCCATTTTTCATCTTTACTCCCCTATCTCTTTCTTTTCTCTCCCCACTCC
TATCTTACTTTATCTCTTCACTTTCTTTTCTTTTCTGGCTTCTTTCGCGG
GTGGGGGGGGGG
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTTTTAAATTTGTATCCCTTTGACTTCC
CTTTGTTGTCTAATTGCTCTGGGTAGGACTTTGAGTAGTATATTGAACAG
GTAGGGAGAGAGTAGACAGCCTTGCCTAGTCCCTGATTTTACTGGTATTG
CTTCAAGTTTCTCTCCATTTAGCTTGATGTTGTCTACTGGTTTGCTGTAT
ATTGCTTTTACCCTGTTTGGGTATGGACTTTGAATTCCTGATCTTTCCAA
GACTTTTGTCATGAAAGGGTGTTGTATTTTGTCAAATGCTTTCTCAGCAT
CTAATGATATAATTGTGTGTTTTTTTTTCCTTTGAGTTTGTTTATATAGT
GGATTACATTGATGGATTTCCGTATATTAAACCATCCTTGCATCCCTGAG
ATGAAGCCTGCTTGATTATGATGGTTCTGATGTGCTCCTGGATTCGGTTT
GCGAGATTTTTATTGAGCCTTTTTGCATTGTTATTAATAAAAGAATTTGA
TCTGAAGTTCTCTCTCTTTGCTGGGTCTTCGTGTGGTTTATGTCTCATAG
TAATTGTCGCCTCCTGAAATGAATTTGGTAATCGGCCCTTTTATTTCTTT
TTTTTTTGTGAATTACTTTTGAAAATAATGCGATTATAATCTTCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_i12.b1 MSMg01no105_i12.b1 CHROMAT_FILE:
MSMg01no105_i12.b1 PHD_FILE: MSMg01no105_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:11 2005
         (487 letters)



>mm_chr5_54809878_54810764
          Length = 887

 Score =  638 bits (330), Expect = 0.0
 Identities = 383/416 (92%), Gaps = 25/416 (6%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctgttgattgcgctgctctgtgtgatctaaagacttatattgacccaagtcagcg 67
           ||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 413 gaattctgttgatggtgttgctctgtgtgatctaaagacttatattgaccaaagtcagcg 354

                                                                       
Query: 68  tgtgaaaacatgatcccctccttgcaagtattaggagatggatcccttagaaggaaagaa 127
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgtgtaaacatgatcccctccttgcaagtattaggagatggatcccttagaaggaaagaa 294

                                                                       
Query: 128 cctccactataggattaataacccctaaaaagagactccagacaactgtcactccccttc 187
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctccactataggattaataactcctaaaaagagactccagacaactgtcactccccttc 234

                                                                       
Query: 188 cacagaaaaatgcacacaagaacgctgccctcatcaaacaccaaattaactgatgctttg 247
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 233 cacagaaaaatgcacacaagaacgctgccctcatcaaacactaaattaactgatgctttg 174

                                                                       
Query: 248 aatttggacttcccacctatgttagtcagggttctctagattcataagaattatgtaatg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 173 aatttggacttcccacctatgttagtcagggttctctagattcataagaattatggaatg 114

                                                                       
Query: 308 gattctaataaatcccatgtatatacatacacacatatctatataacatatatatataca 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 113 gattctaataaatcccatgtatatacatacacacatatctatataacatatatatata-- 56

                                                                   
Query: 368 tatctgtataacatatctatatatacacatatatatgtatatacatacgtgtgtgt 423
                                ||||||  |||||||||||||||||||||||||||
Sbjct: 55  ---------------------tataca--tatatatgtatatacatacgtgtgtgt 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)