BAC Information

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BAC

Clone NameMSMg01-105I19
Chromosome5 (Build37)
Map Location 82,830,932 - 82,831,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105I19.T7 (MSMg01no105_i19.b1)MSMg01-105I19.TJ (MSMg01no105_i19.g1)
ACCAG319874AG319875
length708705
length of high quality
(start - end)
445 (37 - 481)343 (65 - 407)
definitionCHROMAT_FILE: MSMg01no105_i19.b1 PHD_FILE: MSMg01no105_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:13 2005CHROMAT_FILE: MSMg01no105_i19.g1 PHD_FILE: MSMg01no105_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTATACGACTCCTATATGCAGAAGATCCGCGGAATTCACAA
AGGGTTACCACCCTGGAGATAGAAAACCTAGGAAAGAGATCAGGAATCAT
AAATGCAAGCATCACTAACAGAATACAAGACATAGAAGAAAGAATCTCAG
GTGGAAAAGATACCATAGAAAACACTAACACAACAGTCAAAGAAAATGAA
AAATGTAAAACAATCCTAACCCAAAACATCAAGGAAATCCAGGATATAAT
GAGAAGACCAAACCTAAGGACAATAGGTGTAGAAGAGAATGAAGATTCCC
AATTTAAAGGACCAGTAAATATCTTCAACATAACTATAGAAGAAAACTTC
CCTACCCTAAAGAAAGAGATGCCCATAAACATACAAGAGGCCTAAGAAAA
TCCAAATAGATTTGACAGAAAAGAAATTCCTCCTATCACATAATAGTCAA
AGCACCAAATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAAGGGAAA
AAGGTCAGGTACCATATAAAGACAGACCTATCAGAATTAAAGCAAACTTC
TCACCAGAGACTATGAAAGCTGGAAGATCCTGTGCAGATGCTGCACAGAC
CCTAAGAGAACACATATGTCAGCCCAGGCTACTATACCCTAGAAATACAT
CAATTTTTATAGATGGAGAAACCAAGATATTCTATGACACAAAACCATGC
ACACAATC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAATGAATACATATTCTTGGCAATTGGCAATGCTTAA
ATAATTTTCTGGCTCTTTGAATTGGTGGCTATTCCTGTAGAAGCAAACAA
CTGGAATCTTATATTCCTGGCTCCACGTTTCATAGCAATAAGCCAAAGGC
ATACAACAATTGTGGAAAATTTAAATTTTTAGAATGCTTACAAGTTCTTG
GTGAAATTTGACATTTACAGAACTGATAAATCCCTCCAATTTACCTCTTT
AATGCCTATTTGAACATTCAAAAGGCTTGTATATATGGTATTACAGAAAT
TAACTAAGTCTAGCATTCAACCGCAACTTATATTCCAAGTGTTGCTTTTT
TGTGTTTGCTTGCTTGGACTTTTGCTGTTGTGACGAAAAGCATGCTTTGC
CACTAAAAAAAAAAAAAACTGTTTTCCCTTATATATACCTTAACCATTTA
CTATCCCGAGAAACGAAAGAATTCTGAGATCCTACTTCAAACGCCTGCTG
ATTATTGCCTCTTCATTGTCCCGAATATCAACATTCCACCAATATTTATA
AGGTCATCCTCCCCACATAACAAGTATAAATTGTCTTTTGAATTCTTGTT
AAAGTATTACATGCTGTACACACGATAAGTACATTAATTACCCACCCTCC
TATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_i19.g1 MSMg01no105_i19.g1 CHROMAT_FILE:
MSMg01no105_i19.g1 PHD_FILE: MSMg01no105_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:13 2005
         (343 letters)



>mm_chr5_82830732_82831474
          Length = 743

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaatacatattcttggcaattggcaatgcttaaataattttctggctctttgaattg 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 543 aatgaatacatattcttggcaattggcaatgcttaaataattctctggttctttgaattg 484

                                                                       
Query: 61  gtggctattcctgtagaagcaaacaactggaatcttatattcctggctccacgtttcata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 483 gtggctattcctgtagaagcaaacaactggaatcttatattcctggctccacctttcata 424

                                                                       
Query: 121 gcaataagccaaaggcatacaacaattgtggaaaatttaaatttttagaatgcttacaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 423 gcaataagccaaaggcatacaacaattgtggaaaatttaaatttttagaatgcttaaaag 364

                                                                       
Query: 181 ttcttggtgaaatttgacatttacagaactgataaatccctccaatttacctctttaatg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 363 ttcttggtgaaatttgacatttacagaactgataaattcctccaatttacctctttaatg 304

                                                                       
Query: 241 cctatttgaacattcaaaaggcttgtatatatggtattacagaaattaactaagtctagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cctatttgaacattcaaaaggcttgtatatatggtattacagaaattaactaagtctagc 244

                                                      
Query: 301 attcaaccgcaacttatattccaagtgttgcttttttgtgttt 343
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 attcaactgcaacttatattccaagtgttgcttttttgtgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)