BAC Information

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BAC

Clone NameMSMg01-105J02
Chromosome5 (Build37)
Map Location 148,135,686 - 148,135,902
singlet/doubletsinglet
Overlap genenone
Upstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903
Downstream geneLOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105J02.T7 (MSMg01no105_j02.b1)MSMg01-105J02.TJ (MSMg01no105_j02.g1)
ACCAG319886AG319887
length716726
length of high quality
(start - end)
217 (131 - 347)139 (123 - 261)
definitionCHROMAT_FILE: MSMg01no105_j02.b1 PHD_FILE: MSMg01no105_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:14 2005CHROMAT_FILE: MSMg01no105_j02.g1 PHD_FILE: MSMg01no105_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGACCGCGGAATT
CACTTTGTACCCAGGCTGGCCTCGGACTCAGAAATCTGCCTGCCTCTGCC
TCCCAAGTGCTGGGATTAAAGGCGGGCGCCACCACCGCCCGGCGTATTTA
TTATTTTTTAATGACTTATTCTTTTATGTGCATTGGTGTCTTGCCTGAAT
GTGTGTCTGTTACAGACAGCTCTAATTATTCACTCTACATCCCAACCACA
GGCTCCCCTCACATGGCCTCTCTCACCATTCCTCTAACCCCACCCCTACA
TCCTACTCTTAAAATCTTTCCACAGCCTCAGCCCTGATGTTCCCTGGGCC
TTGAGTGTATGCATTGCATTGTATACTTACCAGTTGGGGCTGGCCATGCT
ATAGTCACCTAGTCTCTGTAGGATGACCATGTGTACATGCAATCCAGGCT
GACAGAGAGAGAATCGGCATTCTGTGGATAGCCCCGTGTTAGGCTATCCT
ATCCCGAGTGTCAGCCCTAACCTTTTGATCACAAGAATAACCCTTAATTG
GCCCCCCTATGTTTGTGCTTTTGTAATACACCACCTTCTTGACTATTGTT
CCCCTTGACTTTTGATTCCCATTCTCCGCTTATATGTCCCAAACCGGTTG
TGTCCACCTCCAACTTTCTGCACCATAACTTTTTTCTCCCTTATACACAT
GCTTTGCTCCTACTCT
CATCTTCTGTCNCTCGATGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCCGCAAAATTCCTAATACCGAAAGG
AGACACACACACTAGGCTAGTATTTTATCATCCCGCATTTTGGTTCACTC
AACTACTCTGTAAGACAACAAGGGCTGCAAAAATGCCGTCCTGTATAGTA
CCTGCCTGACAAGCATGAAACCCTGAGGACCCATCACCCACATAAAGAGC
CAAGTGAGGCTATTAGCATCTGTAATCCCATCACCGAGGAGGAGGAGACA
GGCCCAGGTTCAGTTAGAGATCCTATCTCAAAAGTATCTCCTACAACAAA
CAGGAGGGCGCTGCCTGGTGCATCTTCACTCCTCAACCCACCTGAGGCAC
TCATCATACCTGCTTTCTAGATGAGATATCCCAAGACTAATACTTTAAAT
ATCTGATCAAGGTTACAAAGTTAGTCTGGAAGCCACTTGTCACACACCCT
TATTTCCAAACCTTCACTGTCACCTAAATCTTTCTACCTGACAAGCAATT
ACCTTTTCGCCAAACCCATCCATCTCCCACATTTCCTATGCACCCTTCTC
CATCGTACCATATTCTGCCAAATCATTGTCTACTGAGCCTTGCCTGACCC
TTTATACCTTATCCCCTCGGAAAACTTACCTAATTGTACACTCTACCCCT
TTCACAATCTTTCCTTGACCATCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_j02.b1 MSMg01no105_j02.b1 CHROMAT_FILE:
MSMg01no105_j02.b1 PHD_FILE: MSMg01no105_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:14 2005
         (217 letters)



>mm_chr5_148135486_148136102
          Length = 617

 Score =  381 bits (197), Expect = e-110
 Identities = 212/217 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaccgcccggcgtatttattattttttaatgacttattcttttatgtgcattggtgtc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 accaccgcccggcgtatttattattttttaatgatttattcttttatgtgcattggtgtc 260

                                                                       
Query: 61  ttgcctgaatgtgtgtctgttacagacagctctaattattcactctacatcccaaccaca 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 261 ttgcctgaatgtgtgtctgttacagacagttctaattattcactctacatcccaatcaca 320

                                                                       
Query: 121 ggctcccctcacatggcctctctcaccattcctctaaccccacccctacatcctactctt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcccctcacatgacctctctcaccattcctctaaccccacccctacatcctactctt 380

                                                
Query: 181 aaaatctttccacagcctcagccctgatgttccctgg 217
           ||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaaatctttccacagcctcagtcctgatgttccctgg 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)