BAC Information

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BAC

Clone NameMSMg01-106A21
Chromosome5 (Build37)
Map Location 139,398,198 - 139,398,932
singlet/doubletsinglet
Overlap genenone
Upstream geneGje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
Downstream genePdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A21.T7 (MSMg01no106_a21.b1)MSMg01-106A21.TJ (MSMg01no106_a21.g1)
ACCAG320242AG320243
length8611,318
length of high quality
(start - end)		47 (62 - 108)735 (89 - 823)
definitionCHROMAT_FILE: MSMg01no106_a21.b1 PHD_FILE: MSMg01no106_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:56 2005CHROMAT_FILE: MSMg01no106_a21.g1 PHD_FILE: MSMg01no106_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCNCCCCAAATTTCCCNCCCCTNCTCCACTCCCTTTTCCCACAN
NACCNCGNAANTCTCTGCTCCCCCCTCTNCTCCTCTGCCTTGNCAACTCT
TATTCCTCCTTCAATACCCTCTAAAACCCAACTCCCCTTNNNCNNCNNNN
TATTTTTAATAAATAATAAACTTAAAAACAAACAGAAAACTAAAAAAAAA
CACGCCCCCCCNNNNNNNNCCCCCNNTTNCTTTCAAAACACAAAACCAAC
CCTNNCCNNNNNNCCCCNNNCCCCCCCCCCCCCTTCCTTTTTTTCTTTAA
AACTAACTAAAAAANNNNNNCCCCCCCNNNNNNNNCCCCTTCTTTCCCCC
CCCCCCTTCCCCCCNCCCCCCCCNCCNCCCNNNNCCCCCCCCCCCNCCCT
CCCCTTTCTATCTTTTTTATCCTTTTAGANNNAAAANNAACCTNNNNNNN
NNNNNNNNNNNNNNNNNTNNTNCTTNCTNNCTCTTTNCTNTTNTTCCCTC
CCCCCNTCCCCCCCCCCCCCCCTTTTCCCACACCTTACTTTTTTCTCCCC
CCCTGGCCNNNNNNCTTCCTTCTCCCCCCCCCCCCTCCCTCCCCCTCTCC
TCCTATCTCACCCCAAACACTACCGNTCNNNTTCCCCCATACCTCCCTTC
CCCCACNTTCTNNCCNCTCTCTCNTTCCTTTCCTTTCTCCCCTCTCCCNC
CTCTCCTCCCTCCCCCTTTCCCCTCCTCTTCTCCCTCCCCCCCCTTCCTA
CCCTCTTCTTCACTTATTTTCCCCTCCTTCCCCNCNCNCNCCCCTTTNTC
NCCTTCCTCCCNCTCCCTCCCTTCTCTCTTCCCTCCTTCATTTCGCCTAC
NCCCCTTACCC

CCACCTATTTTTTTTTAACATGGAGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAATATACCTCAGGCAATAC
CATATCCTTGTCTTCCATCAGAACAAGGCTCATGGCTCTCTGCCCAGCTC
CCTGCTGCCCTGCCTATGCTGTGCTCTGATGGTCTAATTTCATTCTGTTG
CTGTCGTAGTAAAACACTGTGACCAAAAGTAATTTAGGAGAGGAAAAGGT
TTATTTGTCTAGCACTTTGAGATCACAGTCCATCATTGAGGGAAGTCAGG
GCAGAAACCCAAGGCAGGAAGCAGGAGGTTCGTCTGCGTGCTCTTCCACT
CAGCATCACTTCCAGCCGGGAACTCTCTTGCAGCCAAAGTACAGCAGAAA
CCACAGAGGATTGGTTTGCTAGCTGGGTCACAGATTCTTATGGAGTGCAG
CACAACCCAGCTTAGGGAATGCTGTTGCCCACAGTGGACTCGACCCTCCA
CACATTCAATTATCAAGACAATCCCCAACAAATACACCCACAGAGAAATC
TAACTTAGACAATGTCCTGTGTGGAGGATTCAGGACTGGATTCGGAGTCT
GTGAATTCAAGATACTTATTTAGAGGGGAAGGGGCAAATGTCAGCCCTCG
GTCATATCACAAGTGGAATGGGACATAAAAATATCTTCCTGACCCTGCCT
GCTGGAGTCTAGCTTCACAGATTTGCACTGAGGGTGATTTGTGAAGTTAG
GGGTCAGAGGAGAGAGCCACCACCATGCTCACTTAGCAACTATGTGACTG
GGCAGGGATCTCAAAAGACAGTGGCAGGAGACTTTGCCCTAGATGGAGAG
AGCACTGTTCCCTCCTCTCTCTAGACATGCTCTCCTATTCACCCTGATTC
TGATAGGGAGAAGGCAGAAGTCAAAGGTGGCAAAAAACCTCCTAGGTTTT
AAAAAAGTTCCCATGTGTAACGCCCCGAAACAAGGAAAGGGGAGCCCGGG
TAAAACAATATCCCCCAATTCCCCGGGGATAATTCCTGGGGGACCCAAAT
AGGTCTACCAATTTTGTGATATGGGGAAAAACAGTGTCTCGGGTGAGAGA
AAAACTCCTCTTTCCCTTGGGTTGGAAAAAGGGTTTTCTAAATAACCCCC
CTCTCCCTAAACCTTGGTTTAAAAAAGATTATGGTGTGTGGCCCTTCCTC
CCCGCGGAGGGGTGCCACAAATTTTTTTTTTGATACCTGGTTGGTGACCC
AATACCCCCCTTCTATAAGTGATTCACTGCATCTGCCATTAAAGAGACCC
TCTTCTTCTTCTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a21.g1 MSMg01no106_a21.g1 CHROMAT_FILE:
MSMg01no106_a21.g1 PHD_FILE: MSMg01no106_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:56 2005
         (735 letters)



>mm_chr5_139397998_139399132
          Length = 1135

 Score = 1398 bits (723), Expect = 0.0
 Identities = 732/735 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaggcaataccatatccttgtcttccatcagaacaaggctcatggctctctgcccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaggcaataccatatccttgtcttccatcagaacaaggctcatggctctctgcccagc 260

                                                                       
Query: 61  tccctgctgccctgcctatgctgtgctctgatggtctaatttcattctgttgctgtcgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctgctgccctgcctatgctgtgctctgatggtctaatttcattctgttgctgtcgta 320

                                                                       
Query: 121 gtaaaacactgtgaccaaaagtaatttaggagaggaaaaggtttatttgtctagcacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaacactgtgaccaaaagtaatttaggagaggaaaaggtttatttgtctagcacttt 380

                                                                       
Query: 181 gagatcacagtccatcattgagggaagtcagggcagaaacccaaggcaggaagcaggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatcacagtccatcattgagggaagtcagggcagaaacccaaggcaggaagcaggagg 440

                                                                       
Query: 241 ttcgtctgcgtgctcttccactcagcatcacttccagccgggaactctcttgcagccaaa 300
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tccgtctgcgtgctcttccactcagcatcacttccagccgggaactctctcgcagccaaa 500

                                                                       
Query: 301 gtacagcagaaaccacagaggattggtttgctagctgggtcacagattcttatggagtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacagcagaaaccacagaggattggtttgctagctgggtcacagattcttatggagtgc 560

                                                                       
Query: 361 agcacaacccagcttagggaatgctgttgcccacagtggactcgaccctccacacattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcacaacccagcttagggaatgctgttgcccacagtggactcgaccctccacacattca 620

                                                                       
Query: 421 attatcaagacaatccccaacaaatacacccacagagaaatctaacttagacaatgtcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attatcaagacaatccccaacaaatacacccacagagaaatctaacttagacaatgtcct 680

                                                                       
Query: 481 gtgtggaggattcaggactggattcggagtctgtgaattcaagatacttatttagagggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtggaggattcaggactggattcggagtctgtgaattcaagatacttatttagagggg 740

                                                                       
Query: 541 aaggggcaaatgtcagccctcggtcatatcacaagtggaatgggacataaaaatatcttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggggcaaatgtcagccctcggtcatatcacaagtggaatgggacataaaaatatcttc 800

                                                                       
Query: 601 ctgaccctgcctgctggagtctagcttcacagatttgcactgagggtgatttgtgaagtt 660
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgaccctgcctgctggagtctagcttcacagatttgcactgagggtgatttgtgaagtt 860

                                                                       
Query: 661 aggggtcagaggagagagccaccaccatgctcacttagcaactatgtgactgggcaggga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aggggtcagaggagagagccaccaccatgctcacttagcaactatgtgactgggcaggga 920

                          
Query: 721 tctcaaaagacagtg 735
           |||||||||||||||
Sbjct: 921 tctcaaaagacagtg 935


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space:   815625
Effective search space used:   815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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