Query= MSMg01no106_g04.b1 MSMg01no106_g04.b1 CHROMAT_FILE:
MSMg01no106_g04.b1 PHD_FILE: MSMg01no106_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:44 2005
(736 letters)
>mm_chr5_133405406_133406541
Length = 1136
Score = 685 bits (354), Expect = 0.0
Identities = 527/676 (77%), Gaps = 142/676 (21%)
Strand = Plus / Minus
Query: 1 tgggctggagagatggctcagcagttaaaagcactgattgctcttccagggaacccacgt 60
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgggctggagagatggctc-gaagttaaaagcactgattgctcttccagggaacccacgt 647
Query: 61 tcgattccccgtacccacatggcagctcacaaccatctgtacgtatcccagttccaaggg 120
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 646 tggattccccgtacccacatggcagctcacaaccatctgtatgtgtcccagttccaaggg 587
Query: 121 atctgatgtcctcttctggcctccatcgacactcggcatgcacacggtgcacaggcacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atctgatgtcctcttctggcctccatcgacactcggcatgcacacggtgcacaggcacac 527
Query: 181 agtgcacaggcacacggtgcacaagcacatggtacacaggcacac--------------- 225
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agtgcacaggcacacggtgcacaagcacatggtacacaggcacacggtgcacaggcacac 467
Query: 226 -----------------------------------------------------ggc---- 228
|||
Sbjct: 466 agtgcacaggcacacggtgcacaagcacatggtacacaggcacacggtgcacaggcacac 407
Query: 229 ---gcacaggcacacggtgcacaggcacacggtgcacaagc------------------- 266
||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agtgcacaggcacacggtgcacaggcacacggtgcacaagcacatggtacacaggcacac 347
Query: 267 -----------------------------------------acatggtacacaggcacac 285
|||||||||||||||||||
Sbjct: 346 ggtgcacaggcacacagtgcacaggcacacggtacacaagtacatggtacacaggcacac 287
Query: 286 ggtgcacaggtacacgatgcacaggcacatgatgtataggcatatacgttacagccaaaa 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 286 ggtgcacaggtacacgatgcacaggcacatgatgtataggcatatacgttacaggcaaaa 227
Query: 346 cattcacacacacaaagcagtaataatcaataaccagtcttgctagcagagcctcctttc 405
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 catccacacacacaaagcagtaataatcaataaccagtcttgctagcagagcctcctttc 167
Query: 406 acacaatctgctttggtttgagggcagttaaacttctgacccctaccttgccttccctga 465
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 acaaaatctgctttggtttgagggcagttaaacttctgacccctaccttgccttccctga 107
Query: 466 tctccatgtgcccccactcccacccccac------cccccagggagaggggttgcagttt 519
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 106 tctccatgtgcccccactcccacccccaccccctacccccagggagaggggttgcagttt 47
Query: 520 gaatgtgcaagctgtc 535
||||||||||||||||
Sbjct: 46 gaatgtgcaagctgtc 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space: 817476
Effective search space used: 817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_g04.g1 MSMg01no106_g04.g1 CHROMAT_FILE:
MSMg01no106_g04.g1 PHD_FILE: MSMg01no106_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:44 2005
(490 letters)
>mm_chr5_133283317_133284207
Length = 891
Score = 530 bits (274), Expect = e-155
Identities = 415/500 (83%), Gaps = 75/500 (15%)
Strand = Plus / Plus
Query: 2 cattgatcctatttagtcctttcctggctgaacatgcagtcccctccagtatactttaag 61
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 202 cattgatcctatttagtcctttcctggcagaacatgcagtcccctccagtatacttcaag 261
Query: 62 aacaatctgcctccattcatatgtgtgtatgaccttttatgtctagtgcttgcctaaccc 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 aacaatctgcctccattcatatgtgtgtatgaccttttatgtctagtgcttgcctacccc 321
Query: 122 tgttgtctaaaacttctatgccttttcactttagttctggtaggaattggatttatcagc 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 tgttgtctaaaacttctatgccttttcactttagttctgataggaattggatttatcagc 381
Query: 182 tttatctgtctgagcaaggcca-acaagccatgtgtcatgttggctaatttaggtcacat 240
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 382 tttatctgtctgagcaaggccacacaagccatgtgtcatgctggctaatttaggtcacat 441
Query: 241 gtatgctgttatttgagaaggtaggtcatattgcagggggtcaatttcacaccctggttt 300
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 gtatgctgttctttgagaaggtaggtcatattgcagggggtcaacttcacaccctggttt 501
Query: 301 gtgatcgtacaaattcagtatgggcatcgcttggtgcagagagcactgcaggggaaggtc 360
| ||| |||||| || |
Sbjct: 502 -t-atc-----------------------cttggt----------ct-----------t- 514
Query: 361 cagcttgaccatttct-g---agt-ttcct--gtg---aga--taaacccggctttactc 408
| || ||||| | ||| || | | | ||| |||| ||| ||||
Sbjct: 515 -a--tt-----tttcttgttaagtgtt--taagggcaaagacttaaaa---gct--actc 559
Query: 409 agaaaggtgcttaacatgtagtgtgtgtatgtgttgtgaatatgtgtatgcatgtgtgtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaaaggtgcttaacatgtagtgtgtgtatgtgttgtgaatatgtgtatgcatgtgtgtg 619
Query: 469 tgcgtgtgtgtgtgtgtgtg 488
|| |||||||||||||||||
Sbjct: 620 tgtgtgtgtgtgtgtgtgtg 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
