Query= MSMg01no106_m10.b1 MSMg01no106_m10.b1 CHROMAT_FILE:
MSMg01no106_m10.b1 PHD_FILE: MSMg01no106_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:42 2005
(702 letters)
>mm_chr5_20882607_20883708
Length = 1102
Score = 1323 bits (684), Expect = 0.0
Identities = 699/704 (99%), Gaps = 2/704 (0%)
Strand = Plus / Plus
Query: 1 ttaaaaggctctgggg-cagtttcactcactttatccttgtgaaaaggggtcactcagag 59
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 199 ttaaaaggctctgggggcagtttcactcactttattcttgtgaaaaggggtcactcagag 258
Query: 60 agaaacaacc-agccgcacacttaaacgtgctcttgggtggaatctgaagtgccgcatgc 118
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaaacaacccagccgcacacttaaacgtgctcttgggtggaatctgaagtgccgcatgc 318
Query: 119 agtcagtcacgtggagtaactgactgtacaacatgcactgtctaagcaataactttgatc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtcagtcacgtggagtaactgactgtacaacatgcactgtctaagcaataactttgatc 378
Query: 179 tttaagttttggtgtagcttctaatatactaaccaagcttttgaaatatatgcacaaaga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttaagttttggtgtagcttctaatatactaaccaagcttttgaaatatatgcacaaaga 438
Query: 239 ttccaccttagttatttttaaaacataactagggaggatatttattgtcttgactactta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttccaccttagttatttttaaaacataactagggaggatatttattgtcttgactactta 498
Query: 299 aactttcaaatatgtagccactgtaaaaaaaaaaaaactttacaaagagcaagatactat 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aactttcaaacatgtagccactgtaaaaaaaaaaaaactttacaaagagcaagatactat 558
Query: 359 ttttgaaacatgcaacatgaagttttcaggtgaatacagtgacaactaagctattaataa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttgaaacatgcaacatgaagttttcaggtgaatacagtgacaactaagctattaataa 618
Query: 419 tataattaaattgccagcgtaagctaaatgcatgctgaattaaatgaccaaaatataacg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tataattaaattgccagcgtaagctaaatgcatgctgaattaaatgaccaaaatataacg 678
Query: 479 tagattttaaagcctttacctactcggtaaaacagtgaatgtaagtggcagtaaccaatc 538
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 679 tagattttaaagcctttacctacttggtaaaacagtgaatgtaagtggcagtaaccaatc 738
Query: 539 ttatttctttttgctttttaaaaaagactaagaagattttgatattatacaattcatgtg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttatttctttttgctttttaaaaaagactaagaagattttgatattatacaattcatgtg 798
Query: 599 tttcaaatcctgtttattatatgtagccatataagtctaatgacatttccataatgaaaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tttcaaatcctgtttattatatgtagccatataagtctaatgacatttccataatgaaaa 858
Query: 659 ttgatttaccatagcaaaaatactatgtgttcatcctgagtgtg 702
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ttgatttaccatagcaaaaatactatgtgttcatcctgagtgtg 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_m10.g1 MSMg01no106_m10.g1 CHROMAT_FILE:
MSMg01no106_m10.g1 PHD_FILE: MSMg01no106_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:42 2005
(388 letters)
>mm_chr5_20950221_20951008
Length = 788
Score = 731 bits (378), Expect = 0.0
Identities = 381/382 (99%)
Strand = Plus / Minus
Query: 6 tatttaagaaaacagttttttctaatctcacaaccttccttttcacatggttagagaaaa 65
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 542 tatttaagaaaacagttttttctaatctcacaaccttcattttcacatggttagagaaaa 483
Query: 66 acaaatgattcgattcaaaggtaaaaatactggttttctccagcaaaagaatatgattat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acaaatgattcgattcaaaggtaaaaatactggttttctccagcaaaagaatatgattat 423
Query: 126 ggttaaacagtacatacaccttcaggatctagacagagcccttcaaatgttcccagcaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggttaaacagtacatacaccttcaggatctagacagagcccttcaaatgttcccagcaga 363
Query: 186 ggtagccctttagatggttttgaggtggtacatgggagagataggaaggagggcacttgc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggtagccctttagatggttttgaggtggtacatgggagagataggaaggagggcacttgc 303
Query: 246 tatctgtaagtcacaagggtaaatgctaagaatttagaaacaaaacatggtcctttctct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tatctgtaagtcacaagggtaaatgctaagaatttagaaacaaaacatggtcctttctct 243
Query: 306 ttaggggtatataactaagcaatgatttatagacaatggaaagccagagatagggggaag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttaggggtatataactaagcaatgatttatagacaatggaaagccagagatagggggaag 183
Query: 366 agagagagagagggagggggag 387
||||||||||||||||||||||
Sbjct: 182 agagagagagagggagggggag 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
