Query= MSMg01no106_m13.b1 MSMg01no106_m13.b1 CHROMAT_FILE:
MSMg01no106_m13.b1 PHD_FILE: MSMg01no106_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:43 2005
(263 letters)
>mm_chr5_93351074_93351736
Length = 663
Score = 501 bits (259), Expect = e-146
Identities = 259/259 (100%)
Strand = Plus / Plus
Query: 1 aagtagcacctgtcttaaagaaaatgagactttgtgtgcttggattttatatgtgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtagcacctgtcttaaagaaaatgagactttgtgtgcttggattttatatgtgtgtga 260
Query: 61 tttgtctcctcaactctagttataagactttgtggtcatctacttcctaattctttcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtctcctcaactctagttataagactttgtggtcatctacttcctaattctttcctg 320
Query: 121 tcctccaaggtcgcctgactgtgtcagttgctgtgagagaatgcgcgccaaagcagctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctccaaggtcgcctgactgtgtcagttgctgtgagagaatgcgcgccaaagcagctta 380
Query: 181 aggaggaaaagcttggttttggctcacagcttgagggtccactcccctgtggtggaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaggaaaagcttggttttggctcacagcttgagggtccactcccctgtggtggaaggt 440
Query: 241 ggcaatgagggccactgta 259
|||||||||||||||||||
Sbjct: 441 ggcaatgagggccactgta 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no106_m13.g1 MSMg01no106_m13.g1 CHROMAT_FILE:
MSMg01no106_m13.g1 PHD_FILE: MSMg01no106_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:43 2005
(541 letters)
>mm_chr5_93502562_93503500
Length = 939
Score = 930 bits (481), Expect = 0.0
Identities = 526/541 (97%), Gaps = 4/541 (0%)
Strand = Plus / Minus
Query: 1 gggccattcttattaagccaccacacttggctaccacatctctc-aagttatgagtgtta 59
||||||||||||| || |||||||||||||||||||||||| || |||||||||| ||||
Sbjct: 738 gggccattcttatgaaaccaccacacttggctaccacatct-tcaaagttatgagcgtta 680
Query: 60 tactaggtgaagcctattcctttgcaatgggattcagtgaaccagggaatttaaaattgg 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tactaggtgaagcctattcc-ttgcaatgggattcagtgaaccagggaatttaaaattgg 621
Query: 120 gccagtgcaaagccctaatcatgtactctttgttgtgactggacctcatgacctggtcaa 179
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 620 gccagtgcaaagccctaatcatgtactctttgttgtgactggagctcatgacctggccaa 561
Query: 180 tataaaccctggccactatgtcttccaaaggcatcccacctacttgtcttgaccatagaa 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tataaaccctggccactgtgtcttccaaaggcatcccacctacttgtcttgaccatagaa 501
Query: 240 tagggaaactgtgagatcagagacatgagcatacgtctgaaatgttcttgagggttatct 299
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 tagggaaactgtgagctcagagacatgagcatacatctgaaatgttcttgagggttatct 441
Query: 300 agggaaacccatacaagtaacaggctgcatgcattcccaaggggtttgctgcctgcatcc 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 agggaaacccatacaagtaacaggctgcatgcattcccaaggggtctgctgcctgcatcc 381
Query: 360 attacacaccatgttcccctgagaaaaagtacctaattagcttacctggctacaaaggaa 419
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attacacaccaggttcccccgagaaaaagtacctaattagcttacctggctacaaaggaa 321
Query: 420 cactgccttttaatagttaattgattatctgatttagattacaatggaactttcacaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cactgccttttaatagttaattgattatctgatttagattacaatggaactttcacaaca 261
Query: 480 ctaaaaaaaaattgccttgcattacagtcaccaatcttttataagtacctacaaccacca 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ct-aaaaaaaattgccttgcattacagtcaccaatcttttataagtacctacaaccacca 202
Query: 540 a 540
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 939
Length adjustment: 10
Effective length of query: 531
Effective length of database: 929
Effective search space: 493299
Effective search space used: 493299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
