BAC Information

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BAC

Clone NameMSMg01-107B02
Chromosome5 (Build37)
Map Location 44,625,119 - 44,625,392
singlet/doubletsinglet
Overlap genenone
Upstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
Downstream geneLOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107B02.T7 (MSMg01no107_b02.b1)MSMg01-107B02.TJ (MSMg01no107_b02.g1)
ACCAG320982AG320983
length1,2591,299
length of high quality
(start - end)
331 (137 - 467)274 (134 - 407)
definitionCHROMAT_FILE: MSMg01no107_b02.b1 PHD_FILE: MSMg01no107_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:24 2005CHROMAT_FILE: MSMg01no107_b02.g1 PHD_FILE: MSMg01no107_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAAACCTNNNTATACCATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGGCCATACCTAAACATATTAGAAGCCATCTANAGNA
AACCAGNAGNCAANATCACCCTAAAAGGACAGAAGNTGGAAGCAATCCCA
CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA
CATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCA
AGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCT
AAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAA
ACAAGTCAATGTTCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACTCCGTTCTCCCCAGTCACAAATAATATAAAATATCT
CGGCGTGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCA
AGCCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTC
CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC
AAAAGCAATCTACAGATTCAATGCCATCCCCATCAAAATTCCAACTCAAT
TCTTCAACGAATTAGAAGGAGCCAATTGCAAATTCATCTGGAATAACAAA
AAACCTAGGATAGCAAAAAACTCTTCCCAAGGATAAAAGAACCTCTGGGG
GAATCACCATGCCCGGACCAAAGGCTTTACAACAGGGACATGGGGATAAA
AACTGGCATGGCACTGTTAAAGAAGCCCGAAAAAGTAGACCAATGGAAAT
ACAATTGAAGACCCCCGAATAGGAACCCCCCACCCCCTATGGTCCACTTG
AACCTTTCAACAAAGGAAGCCTAAAAACCTATCCCATTGGAAAAAAAGGA
CAGCCATTTTCCAACCAATTGCTGGCTGGCCACCATCTGGCTTGGTCACC
CCGGGTAAAAGAAATGGCAAAACCGAAATCCCAAACTTATCCCCCCTTGG
GACCCTAAGGGCCAAAATCCTCAATCGGGAACTCATGGGAAATCTTCCAC
CTTAAAACCCCGAAACCCCTCTGTCAACACTTTATTAAAGGGCAATAAAA
CGGTCGGTAATACAAAGCCTCTGAAAGACAAATCGGGGCAACCAGGGGCC
ATAAACAAT
NCCAATTTTTNTCTCAACATGCGATGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAAAGCCAGCATTTTAG
TCACTGAAGAGGCAGAAGACCTTAATGGCTCCTGAAGCTGCTTGTGTGAA
ATTTGAAGTTCTAGAAGATTCTGAATAACTATAAATTCCAGGTTGGGGGG
AGATGCTATCTGATTTTCAGTCTGCGTGTCTGTCGTCTCCCCAGAATTTC
ACAGGTAGGATGAGTGTATGTCAGCTTGGCATGAGATGCTCTGTTTTGAT
CCATTTAATTTAGACACTTGTTATAATGTAAGTGCTTTTGCTTTCACTTT
GGCAATTGGCATGCAATTTTAATTAGCACTTGGAACACAATAGAATGTGT
TGATGAATTTTTTGACATGAAGAAATACGTTCATAATGGCCTGTCTTGAG
GACTCTGGCAGCATCCAAAAACGACATTCTCAGTGTACTGCACAGGATTT
CTGAGAACTCAGCCTGGCTGCCATTTATGCTCTTATATATTAATCATCTC
AGTGTTTTCAGATGTCAAAATATTGGCATGAGCAGAGTTGTCATCTATGC
TGCACCAAGATTACCAATTTCTCTATTATCCTGATAAAGTGGCCAATGTA
TAAAGAAACGATGTATTTTCTATGCCTTGCCAGACTTCTCTTCCAACCTC
CGTCATCCATGTCTTCCTAAGTTGTTAAGCCCCCTCAGCCATCTTCTTAC
CAGCATTTCCTCCTAATTGCTCCGCTTGCTTTCTGTTTATAACTACTTTT
CCGCCTTCTGGCAACCTTGAGACTGGTGCTGTATGTTCATTTTGTTCATA
AAAGAATTCCCCTTCCCTGCTTGACTCTTTTTGCTTATTCACCATTGTTA
TTCTTGTTTCACGGTCCTATAAGTTCTCCCCTGTTTATACATATTTAAGG
TCTTATGGTCTGTTGATATTGTGGTTTCCAATAATGTGGTCTTCAATTTT
CTTGGCAATATGAACTCCTTTTTCTGTTATCAATCCTTTTTCCTTGTATC
CCGGCTGTCCCAGTCCTCTCTTGTTCTTGTCCAGAAATGCAATTGACTAT
TTCAAAATGTGCCTTCAAATCTTCTCTGTAACAACTTGTCCTTCTCTCCC
GTCACTCTTTCAATTTGCGTATTCCCCTATAAAAAATACTCTTTTTCTCA
TATATAATATCTTCTCTCTCACCCTCTCTGTAAATGTTTCTCGTCTCTTC
CGTCCTCTCCGTATAACTATATTCTTCTTCGTACTTTATCTCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_b02.g1 MSMg01no107_b02.g1 CHROMAT_FILE:
MSMg01no107_b02.g1 PHD_FILE: MSMg01no107_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:24 2005
         (274 letters)



>mm_chr5_44624919_44625592
          Length = 674

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagctgcttgtgtgaaatttgaagttctagaagattctgaataactataaattccaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagctgcttgtgtgaaatttgaagttctagaagattctgaataactataaattccaggt 260

                                                                       
Query: 61  tggggggagatgctatctgattttcagtctgcgtgtctgtcgtctccccagaatttcaca 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tggggggagatgctatctgattttcagtctgcgtgtctgtcctctccccagaatttcaca 320

                                                                       
Query: 121 ggtaggatgagtgtatgtcagcttggcatgagatgctctgttttgatccatttaatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaggatgagtgtatgtcagcttggcatgagatgctctgttttgatccatttaatttag 380

                                                                       
Query: 181 acacttgttataatgtaagtgcttttgctttcactttggcaattggcatgcaattttaat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacttgttataacgtaagtgcttttgctttcactttggcaattggcatgcaattttaat 440

                                             
Query: 241 tagcacttggaacacaatagaatgtgttgatgaa 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcacttggaacacaatagaatgtgttgatgaa 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)