BAC Information

Click to search

BAC

Clone NameMSMg01-107C04
Chromosome5 (Build37)
Map Location 51,045,433 - 51,182,750
singlet/doubletdoublet
Overlap geneLOC100041015, LOC242987
Upstream geneLOC666223, Gpr125, EG637307
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107C04.T7 (MSMg01no107_c04.b1)MSMg01-107C04.TJ (MSMg01no107_c04.g1)
ACCAG321034AG321035
length1,2991,281
length of high quality
(start - end)
325 (133 - 457)195 (148 - 342)
definitionCHROMAT_FILE: MSMg01no107_c04.b1 PHD_FILE: MSMg01no107_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:34 2005CHROMAT_FILE: MSMg01no107_c04.g1 PHD_FILE: MSMg01no107_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,045,433 - 51,045,757)(51,182,556 - 51,182,750)
sequence
CATTTTTNNNNCATCATTGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCTCACAGTAGTATGAAACCCTTTACTACCTCTCTATCTTATGA
CAAATTCAGGTCAGTCCCTTTAGGATACCACGCAACATCATACATCCATT
AATTTCTGAGAAGAATTTAAACTCAGGTGGTCCAGCTTGTGAGTTAGTGT
TCTTTATTGCTGTACTGCACTGTATTTACAGTACAAATGACTAAGATAAG
CATTTGTAAATTGTAATAAGGTTATCTATTTGCTCCAGAAGACTGAGTTC
CTACAGGACAAAGACCATGTTACTCATTTTTATACCTGGCATATAGCAGT
TCGGTGCATAGAAGTGCAATAAATAATTCCCAATGAGTGAAATGGGCTTC
GCATTTATATCTAGCTCTTCCATCCCCAGCTTTCCTCTCTATCGCATTAG
TCACCTCTATTTTATGCCGCCCCCCATCTTCCTGTTATCCATGAATACAA
GAAATGCATCTGCTCTGCTAGTTGAAATAGTAGCTAAGACATTTATTGAA
GAAGACTACTAATCCATTTCAATTATTTCCTTTAATGTTACAACACTTAT
GATTCAAAAAGGAATGCCAATTTCCCTAGGACTAGTCGTGCATAATTAAG
ATGGAGTTTGCCTACCCTTATCGCCTTTCTCATGTGGTAGTTCTCCCTTT
CTTTGTCGGAACAACCCCCCCCTCTTCTGTTCTTACTTTTTTCCTTGCAC
AACTAGCAAACTTTCGGTCCACATTTTTTAAAATTACCTTGGTTGTAAAA
CCTCTTCACTATCCCCTTTTAATATTTCCCTTAACTTTTTATCTCCCCTT
CCCCTTTCCTTTATTGGGCATGCTTCTTTATCTTTCATTTCCTTTATCAT
TTTAGTTCCTGGAAATTTTTACTATCTCCTGTTACCCTTTTCTTCTCTCC
AAATATCCCACCGCATATCCTTTTTTAAATCCTCCTTTTTCCTTTAATTG
ATTTGTTAACCCCCCCCCTCTTTTTCTTTTTTTTTTTCCCCCCCCCCCCC
CCCCCCCATATCTACCCTATTCTCTACTCCTTTTTTGGTCTCCTCTTTCT
TCTCTCTTTTATTTCACTCTCCCTCCCTCTTAAATATATTATTTTTCTCC
TACACTCCCGTATTAGATACCTTTGCTCACTTCCTCAAATCCTTGTCTCA
CACTTCTGCTTCTTCTATGTTAACCTCCGGCATTGACCCTCTTCTGCTTC
TTTGTTCTTACACCACCTTTTGGTTGATTCTCCTTCCCTCTTGTGACAA
NCCATAAATANNNNNGAAAGATGGTAGGCGGTXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGGTCCACCAGNT
AGAAATAAAATACTAATTGTGTCCTTTAAAAGTGGCTATATTTAAGNAAA
ATTTAAAATTCAAAAATAATATGAAAACTGGTCTCTTGTTGTAGCAATGG
GAGTGGGGTTACAAGGAGAGCTAACTCAGAAGAGATACCATTGGTTCTAA
AAATGGCAGACAAGTTAGACATGGGGAAAATCACTATAGATTCAGTAAGG
TCAAGCTGTAGAAAACCAAGATGCAGGCGTACACACTGCCATCCTTAAAG
ACCACTGAAGAAGAAAAAAGAACTGAAATATTCTAACAGCCTAGACTGGA
GAATTTCTCCACCCTTTTTTTTCTTGTCATCTTTGAGATCTCCTGCTAAT
GTGGAGGAAGGACACTTGTTTTTTTCCCCCCCCCCACAAGCTGTATTGTG
AAAAAAAAAAGAAGGGGGGGTATTGTTATTGGACTGCATGTTAATGAAAT
GGATATCCCTAACTCAGTAGGACTACCAAGTTTTATCTGTTTGCTTTAGC
ACATTAATAAAAAATTTTGTGTAATGAATGATTAATATAAACATATTCTG
TATTAATATAATTTTTTTATATTATATTAATAACTAATATTGTATATTTT
TAAAATTTGAAAATATGTTTTTTATATTAATGTGAATAGTCTTGAAAATT
TTTGAATAATAATTTCTTTTTTATTAATAATTATTATATTATTATTGGAT
TTTATGTATTTATTTTATTTATTTTTCTAAATGTAATTTATAAAGATTTA
TTAAAAAATATATATTTAATTTTTTTAAACACAATTATTTATATTTATGT
TATAATTATTTATCTTTTATTATGTATTTTATTTTGTATATTCATATTAT
AATTATCTTCTTTATATCTGTTTTTCTATATTTTTTTATTCTATTGTTAT
TTTAATTTAATATTTATTATTTATTTCTTTATAATTTTATATATATTATA
TTTTTTATTTTTTATTATCAATTTTTAAATTATTGTAATCAATATATAAT
ATAAATGAATTTCTTTTTATTAGTTATTTCTATATTTTTTTTAAGATTTA
ACGTATTTTAATTTTAATGTTTAAATTTTTTCTAATTTATCGTTTTTTTA
TTAACTAATATAATTTATATTAATATCTATTATTAAACATTATATCTATT
GACACTATCTATATTATTAAATATAAGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_c04.b1 MSMg01no107_c04.b1 CHROMAT_FILE:
MSMg01no107_c04.b1 PHD_FILE: MSMg01no107_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:34 2005
         (325 letters)



>mm_chr5_51045233_51045957
          Length = 725

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacatcatacatccattaatttctgagaagaatttaaactcaggtggtccagcttgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caacatcatacatccattaatttctgagaagaatttaaactcaggtggttcagcttgtga 260

                                                                       
Query: 61  gttagtgttctttattgctgtactgcactgtatttacagtacaaatgactaagataagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttagtgttctttattgctgtactgcactgtatttacagtacaaatgactaagataagca 320

                                                                       
Query: 121 tttgtaaattgtaataaggttatctatttgctccagaagactgagttcctacaggacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtaaattgtaataaggttatctatttgctccagaagactgagttcctacaggacaaa 380

                                                                       
Query: 181 gaccatgttactcatttttatacctggcatatagcagttcggtgcatagaagtgcaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccatgttactcatttttatacctggcatatagcagttcggtgcatagaagtgcaataa 440

                                                                       
Query: 241 ataattcccaatgagtgaaatgggcttcgcatttatatctagctcttccatccccagctt 300
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 441 ataattcccaatgagtgaaatgggcttcgcatttagacctagctcttccatccccagctt 500

                                    
Query: 301 tcctctctatcgcattagtcacctc 325
           |||||||||||||||||||||||||
Sbjct: 501 tcctctctatcgcattagtcacctc 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no107_c04.g1 MSMg01no107_c04.g1 CHROMAT_FILE:
MSMg01no107_c04.g1 PHD_FILE: MSMg01no107_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:34 2005
         (195 letters)



>mm_chr5_51182356_51182950
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatttaaaattcaaaaataatatgaaaactggtctcttgttgtagcaatgggagtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaaatttaaaattcaaaaataatatgaaaactggtctcttgttgtagcaatgggagtggg 336

                                                                       
Query: 61  gttacaaggagagctaactcagaagagataccattggttctaaaaatggcagacaagtta 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttacaaggagagctaaatcagaagagataccattggttctaaaaatggcagacaagtta 276

                                                                       
Query: 121 gacatggggaaaatcactatagattcagtaaggtcaagctgtagaaaaccaagatgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gacatggggaaaatcactatagattcagtaaggtcaagctgtagaaaaccaagatgcagg 216

                          
Query: 181 cgtacacactgccat 195
           |||||||||||||||
Sbjct: 215 cgtacacactgccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)