BAC Information

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BAC

Clone NameMSMg01-108C14
Chromosome5 (Build37)
Map Location 82,661,618 - 82,661,965
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108C14.T7 (MSMg01no108_c14.b1)MSMg01-108C14.TJ (MSMg01no108_c14.g1)
ACCAG321683AG321684
length676695
length of high quality
(start - end)
399 (50 - 448)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no108_c14.b1 PHD_FILE: MSMg01no108_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:55 2005CHROMAT_FILE: MSMg01no108_c14.g1 PHD_FILE: MSMg01no108_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACAAAAACATCAAGCTAACACACACACACACACACACACA
CACACACACACACACACACACACACATCCAAGCTAATATATACACAGAGC
CCTTCATACAGAGCTATGTGGGCCCCATGCTTTCTGCCTGTCTCTGTGAG
TCTATATGTATGGAGTCTGCTTAGTTGATTAAGTGAGTCATGTTCTCCTG
GTGTCCTCCGTCTCTGACTCCTATCATCTTTCTGCCCTCTCTTCCGTGGG
CAAAGTTGTAATGTCTTAGTGTGGATTAAATTTGTTTGTGTAAAGTAAGA
ACTACTTCATGAAGCTCCATTCTTGTATTTTGTTTGTTTCCTTTGTTGTT
GGTTGGTTGGTTTGTTGCTGTTGTCATTATGAACAGCAAATTACTAAATT
GCTGAGGCTGAACTCAAATGTGTAATCTTCATGGCCTACTCTTTCCCGTA
ATATGTGTGCACCATGGTATTACTGCATAATAAATTTCGAACTTTGAGTT
CTAATGTTTATGTCTCTTACTCTCATTTTTTCGCCCATCTTTTGTTTTTT
TCCCTATTATTTCCCACTCTTTACTCTCATGAGTTATATATTTCTTTTCT
TGCTCACCCCGCCTTATTATTCTACA
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGCCAACCATTGGACTGA
GAACAGGGCATCCAATCGAGGAACTAGAGAAAGGATCCAAGGAGCTGAAG
GGTTTTGCAGCCCCATAGGAGGAACAACAATGCAAACCAAGCAGTACCTC
CAGAGCTCCCAGGGATAAACCACCAACCAATGAGTACACATGGAAGGAAT
GGATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTGTA
GGAGAATGCAAGGGCCAGGAAGTGGGTGTGGGTGGGTTGCTTAGCGGGGG
GAGGGGGGAGGTTTTTNTTTTTTTTCCTCTCTCTTTTCTTTTTTTTGTTC
TTTCTCCCTTCTGCCGTTCCCCCATTTTTTTTCTTTTTTTTTTCTTCCTT
CCCCCTTTTTTTCTGCTTTTCCCCTCTCTTTTCCTTTCGCCCATAATTCT
CTCCATTTATTTTTCATTTTCTCCCCTTTTTCTTCTCTTTCCTCCTTCTT
TCTCCTTCTTTCCTTCTTTTTCTCCCCTCTCTTTTATTCTCCTCTTTCCA
CCCTCTTCTCCCTTTCTTCTTCTCTTTTTCCTCCCGCCCCCTATCTCATC
TCTCCTTTCATGCTCGCCCCTCCCCCCCTCCCTCCTCTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_c14.b1 MSMg01no108_c14.b1 CHROMAT_FILE:
MSMg01no108_c14.b1 PHD_FILE: MSMg01no108_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:55 2005
         (399 letters)



>mm_chr5_82661367_82662165
          Length = 799

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%), Gaps = 1/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 53  acacacacacacacacacacacacatccaagctaatatatacacagagcccttcatacag 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 acacacacacacacacacacacacatccaagctaatatatacacagagcccttcatacag 311

                                                                       
Query: 113 agctatgtgggccccatgctttctgcctgtctctgtgagtctatatgtatggagtc-tgc 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 312 agctatgtgggccccatgctttctgcctgtctctgtgagtctatatgtatggagtcctgc 371

                                                                       
Query: 172 ttagttgattaagtgagtcatgttctcctggtgtcctccgtctctgactcctatcatctt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttagttgattaagtgagtcatgttctcctggtgtcctccgtctctgactcctatcatctt 431

                                                                       
Query: 232 tctgccctctcttccgtgggcaaagttgtaatgtcttagtgtggattaaatttgtttgtg 291
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tctgccctctcttccttgggcaaagttgtaatgtcttagtgtggattaaatttgtttgtg 491

                                                                       
Query: 292 taaagtaagaactacttcatgaagctccattcttgtattttgtttgtttcctttgttgtt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 taaagtaagaactacttcatgaagctccattcttgtattttgtttgtttcctttgttgtt 551

                                                           
Query: 352 ggttggttggtttgttgctgttgtcattatgaacagcaaattactaaa 399
           ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 552 ggttggttggtttgttgttgttgtcattatgaacagcaaattactaaa 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)