Query= MSMg01no108_f14.b1 MSMg01no108_f14.b1 CHROMAT_FILE:
MSMg01no108_f14.b1 PHD_FILE: MSMg01no108_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:11 2005
(555 letters)
>mm_chr5_41698582_41699535
Length = 954
Score = 1019 bits (527), Expect = 0.0
Identities = 544/551 (98%), Gaps = 5/551 (0%)
Strand = Plus / Plus
Query: 7 gaattctagagg--ttccttctgatgttatctgatgttcctgagtgcatgtgcatataac 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctagagggttt--ttctgatgttatctgatgttcctgagtgcatgtgcatataac 264
Query: 65 acttacagataaatacaaaataagaagaattttaaaaagaaaaaggatactttcaacaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttacagataaatacaaaataagaagaattttaaaaagaaaaaggatactttcaacaat 324
Query: 125 aaaaatgagaactgggaaaccatagaaaattattttcagtataagtgaaactgatcaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaatgagaactgggaaaccatagaaaattattttcagtataagtgaaactgatcaaaa 384
Query: 185 atacaaaattaacagctacagttcaaagacaaaggtaaaaaacaaatacaagtagaaaag 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 atacaaaattaacagctacagttcaaagacaaaggtacaaaacaaatacaagtagaaaag 444
Query: 245 aaaaggagaaaatgaatggtcttctcacaaagaagttctgtgagtggacaagagcaccat 304
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaggagcaaatgaa-ggtcttctcacaaagaagttctgtgagtggacaagagcaccat 503
Query: 305 ggccatgttcatgtttatctcttgcttaatgcataagaggaagacagagctgaagctgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggccatgttcatgtttatctcttgcttaatgcataagaggaagacagagctgaagctgag 563
Query: 365 aaatctttctttctcttttctatttctgaaagcctaataatctctctggcttccatttct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaatctttctttctcttttctatttctgaaagcctaataatctctctggcttccatttct 623
Query: 425 ctctaatggactgtgggatttcttctgaaccctttatacttgaagctcaagctctttaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctctaatggactgtgggatttcttctgaaccctttatacttgaagctcaagctctttaga 683
Query: 485 cgacacatggaatgcctttgacctaaacgaaggcagctccatttgaaggtgattcctgta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cgacacatggaatgcctttgacctaaacgaaggcagctccatttgaaggtgattcctgta 743
Query: 545 aagacaatgtc 555
|||||||||||
Sbjct: 744 aagacaatgtc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_f14.g1 MSMg01no108_f14.g1 CHROMAT_FILE:
MSMg01no108_f14.g1 PHD_FILE: MSMg01no108_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:11 2005
(516 letters)
>mm_chr5_41800916_41801831
Length = 916
Score = 959 bits (496), Expect = 0.0
Identities = 511/516 (99%)
Strand = Plus / Minus
Query: 1 actaatagacctggatagatcctcaccactgaacagcacttaacattgcacctagcatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 actaatagacctggatagatcctcaccactgaacagcacttaacattgcacctagcatac 657
Query: 61 ttccagatgttatccaagggatgaaaacaatgaagatactcttttctttcaagaagcttt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttccagatgttatcgaagggatgaaaacaatgaagatactcttttctttcaagaagcttt 597
Query: 121 ctattgtgggtaaaggagtagtttgtagccacaaaatggctagtggcttaaggagagatg 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctattgtgggtaaagaagtagtttgtagccacaaaatggctagtggcttaaggagagatg 537
Query: 181 atggctgctttccccatggcaccaatttgtgtgacttaagagcccctataaggggtcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atggctgctttccccatggcaccaatttgtgtgacttaagagcccctataaggggtcttt 477
Query: 241 ctctaaagaagagttggttctcagagagatttggcagttgcagtatcagatgtaggaacg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 476 ctctaaagaagagttggttctcagagagatttggcagttgcagcatcagatgtaggaacg 417
Query: 301 tctagcaagtgagaatcaatcaatctcattctatgtggcttaaaccaattaaaatccaaa 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 416 tctagcaagtgagaatcaatcaatctcattccatgtggcttaaaccaattaaaatccaaa 357
Query: 361 atcaagtatagaaggctctggagtctctgcacttctttctgactgcattttcggttctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atcaagtatagaaggctctggagtctctgcacttctttctgactgcattttcggttctat 297
Query: 421 gaagtggacatggccgcccttaccatggaaacgagtttcctgaagttctcagggcattta 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaagtggacatggccgtccttaccatggaaacgagtttcctgaagttctcagggcattta 237
Query: 481 tgtcccttgtctcaggtagtcagagtttcctttgca 516
||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgtcccttgtctcaggtagtcagagtttcctttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
