NCCCCNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCACTTCCGCCAATAACAGAGCTGTTTTAGTATTTTT
CAACACCTAAAATCTAGGAAATTAGACCATATGTCTCAGTGGTCCTTACC
AATGACCTAGCCAGCTCTCTGCCAGGGAGTCTGTATTCCAGCCTTTCCCC
AAACCATTTTTGGATCAATTAACCTACTGGTTTGTCATCTCTCACTAAAA
CGAGGTATCTAAATGGTAACTCTTTCAATTTTCATTTGCTTGTTTTGGGT
TTTTATGTTGTCTGTATTATGTATTTATCTATTCACTTAATTCTTTATTA
TTTCTGTCTCAATCTTTATTTTCCTTTCTCTCTTTTAAAAAAAATAGGGG
CATGACAATCTGAGACAACTTGTTCAGATGTGATGAGCTATGACAAGTGG
TGGCTTGCATCACAACCCAACATCAGTGTGTACAGGACATCTCTTGCAGT
AAGTCAGGAATTGTGACAACTGGAAACAGGAGTTCTTGCCATCCTTTAAA
TACATGCTATAATCACAGTTTTTATGCTGGACACAATGTCTCTGCTTTTA
CAGGCTCTCTTGAGCCAAGTTAAAATGTGGTCTATTTTCTCTGAAAGTAA
AGGTTAGTCATAATTTTATACTTTCA

NCCCCCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGTCCCATGTAAATGAG
TTGGAGAAGGGACTGAAGGAGTTGAGGGAGTTTGCATCCCCATAGAGGGA
GCAAAAGTATCAACAGGCCAGACCTCCTGGAGCTCCCAGGGACTGGACCA
CCAACCAAAAAAAGCACATGGAGGAACCCATGGTGCTATCTGCATATGTG
GCAGAGGATGGCCTTATTGGAAGGTCATCAGTGGGAGAAGAGGCCCTTGC
ACCTGAGGGTGTTCGGTGCCCCAGTGTAGGGGAACACCAGTGTGGGAGGA
TGGGAGTGGGAGGATGGGAGATGCCTCTTTTTCCTCTTCCCTTTTCCTTT
CCCTTCTCTTCCTCTTTCTCCCCCCCCTTCTTTCCTTTTCTTTTTCTTCT
TCTTTTCTTTCTCCTTTTCCTTCCCCCCCCTTCTCCCCTTCCCTCCCCTT
TTCTCCCCTTTTCTTCTCCTCTTCCCTCCCCTTCCCCCCTTCCCCTCCCC
CCCTCCTCTTTCTTTTTTCCCTTCCCCCCCCCCCCTTTTTCCCCTTTTCT
TCCCCTTCCTTTCCCCTCCCTTTCTTTCCCCCCTTTTTCCCCCTCCCTTC
TCCTCTTTTCTTCCCTTTTCCCCCTTCCCCT

Query= MSMg01no108_g05.b1 MSMg01no108_g05.b1 CHROMAT_FILE:
MSMg01no108_g05.b1 PHD_FILE: MSMg01no108_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:14 2005
         (599 letters)



>mm_chr5_50906589_50907584
          Length = 996

 Score = 1098 bits (568), Expect = 0.0
 Identities = 588/596 (98%), Gaps = 3/596 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatcacttccgccaataacagagctgttttagtatttttcaacacctaaaatct 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggaattcatcactttggccaataacagagctgttttagtatttttcaacacctaaaatct 737

                                                                       
Query: 64  aggaaattagaccatatgtctcagtggtccttaccaatgacctagccagctctctgccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aggaaattagaccatatgtctcagtggtccttaccaatgacctagccagctctctgccag 677

                                                                       
Query: 124 ggagtctgtattccagcctttccccaaaccatttttggatcaattaacctactggtttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggagtctgtattccagcctttccccaaaccatttttggatcaattaacctactggtttgt 617

                                                                       
Query: 184 catctctcactaaaacgaggtatctaaatggtaactctttcaattttcatttgcttgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catctctcactaaaacgaggtatctaaatggtaactctttcaattttcatttgcttgttt 557

                                                                       
Query: 244 tgggtttttatgttgtctgtattatgtatttatctattcacttaattctttattatttct 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 tgggtttttatgttgtctgtattatgtattaatctattcacttaattctttattatttct 497

                                                                       
Query: 304 gtctcaatctttattttcctttctctcttttaaaaaaaataggggcatgacaatctgaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 gtctcaatctttattttcctttctctcttttaaaaaaaataggggcatgacaatctggga 437

                                                                       
Query: 364 caacttgttcagatgtgatgagctatgacaagtggtggcttgcatcacaacccaacatca 423
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 c---ttgttcagatgtgatgagctatgacaagtggtggcttgcatcacaacccaacatca 380

                                                                       
Query: 424 gtgtgtacaggacatctcttgcagtaagtcaggaattgtgacaactggaaacaggagttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgtgtacaggacatctcttgcagtaagtcaggaattgtgacaactggaaacaggagttc 320

                                                                       
Query: 484 ttgccatcctttaaatacatgctataatcacagtttttatgctggacacaatgtctctgc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgccatcctttaaatacatgctataatcacagtttttatgctggacacaatgtctctgc 260

                                                                   
Query: 544 ttttacaggctctcttgagccaagttaaaatgtggtctattttctctgaaagtaaa 599
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 ttttacaggctctcttgagccaagttaaaatgtggtccattttctctgaaagtaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 996
Length adjustment: 10
Effective length of query: 589
Effective length of database: 986
Effective search space:   580754
Effective search space used:   580754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)